Table 1 Comparison of linkage analysis results between microsatellite and SNP based genome scans
From: Resampling methods to reduce the selection bias in genetic effect estimation in genome-wide scans
| Â | Â | Â | Location estimates (mode) | Power to detect linkage | Mean test statistic | |||
|---|---|---|---|---|---|---|---|---|
Pop | Chr. | True location (cM) | MS (cM) | SNP (cM) | MS | SNP | MS | SNP |
AI | 1 | 168.98 | 169.85 | 167.4 | 4/100 | 7/100 | 4.33 | 4.56 |
| Â | 3 | 299.32 | 293.61 | 295.6 | 22/100 a | 24/100 | 4.79 | 4.77 |
| Â | 5 | 5.45 | 7.34 | 5.94 | 11/100 | 11/100 | 4.53 | 4.63 |
| Â | 9 | 5.88 | 4.78 | 5.54 | 10/100 | 9/100 | 4.39 | 4.38 |
KA | 1 | 168.98 | 169.97 | 168.0 | 2/100 | 2/100 | 4.07 | 4.24 |
| Â | 3 | 299.32 | 293.75 | 295.9 | 14/100 | 17/100 | 4.41 | 4.77 |
| Â | 5 | 5.45 | 7.01 | 5.69 | 20/100 | 40/100 | 4.67 | 4.71 |
| Â | 9 | 5.88 | 6.80 | 5.96 | 52/100 | 45/100 | 4.95 | 4.92 |
DA | 1 | 168.98 | 169.95 | 168.8 | 82/100 | 89/100 | 5.20 | 5.43 |
| Â | 3 | 299.32 | 293.62 | 295.7 | 48/100 | 56/100 | 4.89 | 4.77 |