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Table 5 Summary of linkage results for ALDX2

From: A genome-wide linkage analysis of alcoholism on microsatellite and single-nucleotide polymorphism data, using alcohol dependence phenotypes and electroencephalogram measures

  

Affymetrix SNPs

Illumina SNPs

Microsatellite

Chr

Location (cM)

LOD (p)

IC/Chr

LOD (p)

IC/Chr

LOD (p)

IC/Chr

1

42–44

 

0.942 (0.02)

0.73 (0.03)

0.932 (0.02)

0.68 (0.04)

0.832 (0.07)

 

247–259

0.81 (0.03)

 

0.72 (0.03)

 

0.68 (0.04)

 

2

19–23

 

0.948 (0.02)

0.86 (0.02)

0.934 (0.02)

0.75 (0.03)

0.845 (0.08)

 

226–247

1.49 (0.004)

 

1.53 (0.004)

   

3

90–93

0.99 (0.02)

0.947 (0.01)

0.70 (0.04)

0.938 (0.02)

 

0.755 (0.08)

6

171–189

1.49 (0.004)

0.947 (0.02)

1.69 (0.003)

0.935 (0.02)

 

0.803 (0.09)

7

3–9

1.01 (0.02)

0.944 (0.03)

2.25 (0.0006)

0.933 (0.02)

 

0.898 (0.05)

 

59–60

0.64 (0.04)

   

0.82 (0.03)

 
 

96–106

1.22 (0.009)

 

0.85 (0.02)

 

0.83 (0.03)

 
 

108–116

0.99 (0.02)

 

0.87 (0.02)

   

9

133–155

1.28 (0.008)

0.947 (0.02)

1.50 (0.004)

0.926 (0.02)

 

0.782 (0.10)

10

47–49

0.75 (0.03)

0.943 (0.02)

 

0.924 (0.03)

 

0.664 (0.08)

 

120–130

1.18 (0.01)

 

1.33 (0.007)

   
 

141–176

1.97 (0.0013)

 

1.78 (0.002)

 

0.74 (0.03)

 

12

167–172

 

0.944 (0.02)

0.94 (0.02)

0.929 (0.03)

 

0.816 (0.08)

17

30–53

1.44 (0.005)

0.922 (0.05)

1.39 (0.006)

0.914 (0.03)

1.83 (0.002)

0.694 (0.08)

X

30–46

1.07 (0.013)

0.915 (0.03)

0.89 (0.02)

0.902 (0.08)

 

0.744 (0.17)

  1. Summary of maximum LOD scores and the corresponding p-values (<0.05) for linkage regions for alcohol dependence phenotype ALDX2. Results are shown for microsatellites, Affymetrix SNPs and Illumina SNPs. The mean and standard deviation of IC are given for each chromosome.
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BMC Genomic Data

ISSN: 2730-6844

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