| | |
Affymetrix SNPs
|
Illumina SNPs
|
Microsatellite
|
|---|
|
Chr
|
Location (cM)
|
LOD (p)
|
IC/Chr
|
LOD (p)
|
IC/Chr
|
LOD (p)
|
IC/Chr
|
|---|
|
1
|
42–44
| |
0.942 (0.02)
|
0.73 (0.03)
|
0.932 (0.02)
|
0.68 (0.04)
|
0.832 (0.07)
|
| |
247–259
|
0.81 (0.03)
| |
0.72 (0.03)
| |
0.68 (0.04)
| |
|
2
|
19–23
| |
0.948 (0.02)
|
0.86 (0.02)
|
0.934 (0.02)
|
0.75 (0.03)
|
0.845 (0.08)
|
| |
226–247
|
1.49 (0.004)
| |
1.53 (0.004)
| | | |
|
3
|
90–93
|
0.99 (0.02)
|
0.947 (0.01)
|
0.70 (0.04)
|
0.938 (0.02)
| |
0.755 (0.08)
|
|
6
|
171–189
|
1.49 (0.004)
|
0.947 (0.02)
|
1.69 (0.003)
|
0.935 (0.02)
| |
0.803 (0.09)
|
|
7
|
3–9
|
1.01 (0.02)
|
0.944 (0.03)
|
2.25 (0.0006)
|
0.933 (0.02)
| |
0.898 (0.05)
|
| |
59–60
|
0.64 (0.04)
| | | |
0.82 (0.03)
| |
| |
96–106
|
1.22 (0.009)
| |
0.85 (0.02)
| |
0.83 (0.03)
| |
| |
108–116
|
0.99 (0.02)
| |
0.87 (0.02)
| | | |
|
9
|
133–155
|
1.28 (0.008)
|
0.947 (0.02)
|
1.50 (0.004)
|
0.926 (0.02)
| |
0.782 (0.10)
|
|
10
|
47–49
|
0.75 (0.03)
|
0.943 (0.02)
| |
0.924 (0.03)
| |
0.664 (0.08)
|
| |
120–130
|
1.18 (0.01)
| |
1.33 (0.007)
| | | |
| |
141–176
|
1.97 (0.0013)
| |
1.78 (0.002)
| |
0.74 (0.03)
| |
|
12
|
167–172
| |
0.944 (0.02)
|
0.94 (0.02)
|
0.929 (0.03)
| |
0.816 (0.08)
|
|
17
|
30–53
|
1.44 (0.005)
|
0.922 (0.05)
|
1.39 (0.006)
|
0.914 (0.03)
|
1.83 (0.002)
|
0.694 (0.08)
|
|
X
|
30–46
|
1.07 (0.013)
|
0.915 (0.03)
|
0.89 (0.02)
|
0.902 (0.08)
| |
0.744 (0.17)
|
- Summary of maximum LOD scores and the corresponding p-values (<0.05) for linkage regions for alcohol dependence phenotype ALDX2. Results are shown for microsatellites, Affymetrix SNPs and Illumina SNPs. The mean and standard deviation of IC are given for each chromosome.
