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Table 3 Association results for the 4 deleterious SNPs identified in replicate 1

From: Standard linkage and association methods identify the mechanism of four susceptibility genes for a simulated complex disease

     Average PDT chi-square value (p-value)
Chr Packet SNP disease allele affection status B subtype CDG subtype EFH phenotype
1 029 B01T0561 2 1.5 (0.22) 10.5 (10 -3 ) 0.5 (0.47) 0.3 (0.61)
3 153 B03T3056 1 85.5 (2.3 × 10-20) 55.2 (10-12) 44.3 (3 × 10-11) 85.6 (2 × 10 -20 )
5 207 B05T4136 1 2.4 (0.12) 1.5 (0.22) 6.4 (0.01) 1.6 (0.21)
9 417 B09T8333 2 14.8 (10-4) 1.1 (0.30) 25.3 (5 × 10 -7 ) 14.7 (10-4)
  1. aThe most significant p-value for each chromosome is bolded.