BMC Genomic Data

Table 2 Power of methods for the disease Loci in the subpopulations

From: Linkage disequilibrium mapping via cladistic analysis of phase-unknown genotypes and inferred haplotypes in the Genetic Analysis Workshop 14 simulated data

	Power [Accuracy]
	Aipotu		Danacaa		Karangar		NYC
	Geno^a	Haplo^b	Geno	Haplo	Geno	Haplo	Geno	Haplo
D1	0.06 [33.3]	0.05 [20]	0.06 [16.7]	0.07 [71.4]	0.04 [0]	0.06 [0]	0.07 [0]	0.07 [28.6]
D2	0.30	0.67	0.40	0.89	0.31	0.49	0.36	0.78
D3	0.05 [40]	0.07 [57.1]	0.06 [33.3]	0.04 [25]	0.14 [14.3]	0.17 [64.7]	0.04 [0]	0.09 [55.5]
D4	0.11 [36.4]	0.26 [46.2]	0.03 [0]	0.07 [14.3]	0.29 [31]	0.47 [63.8]	0.08 [37.5]	0.21 [42.9]
M1	0.01 [0]	0.06 [33.3]	0.07 [42.9]	0.16 [68.8]	0.01 [0]	0.14 [57.1]	0.06 [16.7]	0.06 [0]
M2	0.08 [12.5]	0.07 [14.3]	0.02 [0]	0.03 [0]	0.03 [0]	0.04 [0]	0.02 [50]	0.09 [11.1]

Power of unphased and inferred haplotype analyses to detect the four disease loci and two modifier loci in the four subpopulations.
^a Geno, unphased
^b Haplo, inferred

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