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Table 2 Power of methods for the disease Loci in the subpopulations

From: Linkage disequilibrium mapping via cladistic analysis of phase-unknown genotypes and inferred haplotypes in the Genetic Analysis Workshop 14 simulated data

  Power [Accuracy]
  Aipotu Danacaa Karangar NYC
  Genoa Haplob Geno Haplo Geno Haplo Geno Haplo
D1 0.06 [33.3] 0.05 [20] 0.06 [16.7] 0.07 [71.4] 0.04 [0] 0.06 [0] 0.07 [0] 0.07 [28.6]
D2 0.30 0.67 0.40 0.89 0.31 0.49 0.36 0.78
D3 0.05 [40] 0.07 [57.1] 0.06 [33.3] 0.04 [25] 0.14 [14.3] 0.17 [64.7] 0.04 [0] 0.09 [55.5]
D4 0.11 [36.4] 0.26 [46.2] 0.03 [0] 0.07 [14.3] 0.29 [31] 0.47 [63.8] 0.08 [37.5] 0.21 [42.9]
M1 0.01 [0] 0.06 [33.3] 0.07 [42.9] 0.16 [68.8] 0.01 [0] 0.14 [57.1] 0.06 [16.7] 0.06 [0]
M2 0.08 [12.5] 0.07 [14.3] 0.02 [0] 0.03 [0] 0.03 [0] 0.04 [0] 0.02 [50] 0.09 [11.1]
  1. Power of unphased and inferred haplotype analyses to detect the four disease loci and two modifier loci in the four subpopulations.
  2. a Geno, unphased
  3. b Haplo, inferred