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Table 1 False positive error rates for methods

From: Linkage disequilibrium mapping via cladistic analysis of phase-unknown genotypes and inferred haplotypes in the Genetic Analysis Workshop 14 simulated data

 

LD regions (95% CI)

No LD regions (95% CI)

Genotypes

0.056 (0.04, 0.072)

0.048 (0.033, 0.062)

Haplotypes

0.064 (0.046, 0.081)

0.054 (0.038, 0.069)

  1. Mean false positive error rates for the two methods, in regions with and without LD, based on false-positive rates in four null regions. Averages were taken over all 100 replicate datasets over all four subpopulations.
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BMC Genomic Data

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