(A) In the genotype view, the red, blue, yellow and white colors represent genotype call AA, BB, AB and No Call. (B) The inferred haplotypes indicating ancestor origins are displayed in correspondence to the genotype view. The different colors represent distinct founder chromosomes. For each individual (column), the father allele haplotype is displayed on the left and mother allele haplotype on the right. (C) In the ordered genotype view, the red and blue colors represent the A and B genotype of father allele (left) and mother allele (right) in each individual (column). The LOD score curve is displayed in the shaded box on the right. The left boundary and right boundary of the box represent value of -2 and 3, and the red vertical line represents 2.