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Table 4 Oligonucleotide primers used in this study.

From: Two previously proposed P1/P2-differentiating and nine novel polymorphisms at the A4GALT (Pk) locus do not correlate with the presence of the P1 blood group antigen

Primer name

Nucleotide sequence (5'→3')

Function

Pk-5'-(-1056)-F

ACAGCCTGTGATGGGAATGAC

a, b, e

Pk-5'-(-740)-R

TTGAGTGCTGACGCCCATCC

b

Pk-5'-(-834)-F

TGGGCACCCATTGAGTGCCA

b, e

Pk-5'-(-550)-R

ACCTCGCCCCATCTTCACAC

e

Pk-5'-(550T)-F

GAACAAATTACCAATAGCAATATGT

e

Pk-5'-(-550insC)-R

CCTCGCCCCATCTTCACAGC

e

Pk-5'-(550insC)-F

AACAAATTACCAATAGCAATATGCT

e

Pk-5'-(-477)-F

GCGGCGTTAAGGATACAGCAA

b

Pk-5'-(-418)-R

CTGATCCCACCGCCTCCTG

b

Pk-5'-(-235)-F

GCGCTCCCTACCTGTTGGC

b

Pk-5'-(-131)-F

GGACCGGGACCCGCAGGG

a, b

Pk-5'-(-160Gmis)-R

CCCGGTCCCCAGAGCA CC

e

Pk-5'-(-160Amis)-R

CCCGGTCCCCAGAGCA CT

e

Pk-5'-(-160G)-R

CCGGTCCCCAGAGCCCTC

e

Pk-5'-(-160A)-R

CCCGGTCCCCAGAGCCCTT

e

Pk-int1-35-R

CGTCCCCCGCAACATCGGC

b

Pk-int1-160-R

GCACAAATGTCGCCTCCAGAA

a, b

Pk-ex2-74_75insC-F

AGGTCGGCTGCTGAGCCCA

e

Pk-int2-R

GGGTGCAACCTGATTGCTAAG

e

Pk-109G-F

TTCACGTTTTTCGTCTCCATCG

e

Pk-109A-F

TTCACGTTTTTCGTCTCCATCA

e

Pk-987G-F

CACGCGGTTCGAGGCCACG

e

Pk-987A-F

CACGCGGTTCGAGGCCACA

e

Pk-1120-R

GGAAGGGCGGCCCAGTGC

e

Pk-1006-F

CCAGGGCACTGCTGGCCC

c, d

Pk-1253-F

GGACAGTGTCCTGTCTCGAG

d

Pk-1697G-R

CCTGTCTGAGGGAAGGGGC

e

Pk-1697A-R

CCCTGTCTGAGGGAAGGGGT

e

Pk-1791-R

TTATTCTATTGATTATTCTCCTGTG

d

Pk-1881-R

CCCCGTCAGAAGAATGGAGC

c, d

HGH-F

TGCCTTCCCAACCATTCCCTTA

f

HGH-R

CCACTCACGGATTTCTGTTGTGTTTC

f

JK-781-L-F

GCATGCTGCCATAGGATCATTGC

f

JK-943-L-R

GAGCCAGGAGGTGGGTTTGCC

f

MO-21

GGTGAGAGAAGGAGGGTGAG

f

MO-31

CCAGCACCCCGGCCAGCA

f

  1. F = Forward. R = Reverse. The underlined nucleotide is mismatched for better specificity.
  2. a. used for amplification of the 5' regulatory region.
  3. b. used for sequencing of the 5' regulatory region.
  4. c. used for amplification of the 3'-UTR.
  5. d. used for sequencing the 3'-UTR.
  6. e. used for PCR-ASP.
  7. f. used as internal control.