From: Patterns of linkage disequilibrium and haplotype distribution in disease candidate genes
Gene | Chromosome location | No. of SNPs | Kb spanned | SNP density (kb/SNP) | Observed No. of haplotypesa | Expected No. of haplotypes | Yin Yang haplotypesb |
---|---|---|---|---|---|---|---|
ApoE | 19q13.2 | 4 | 3 | 0.75 | 6 | 16 | GATC, CGTC |
COL1A1 | 17q21.3-q22 | 3 | 16 | 5.33 | 4 | 8 | GGG, GTG |
ER-α | 6q25.1 | 7 | 291 | 41.57 | 20 | 128 | TCGCGGG, CTGCGGG |
LEPR | 1p31.2 | 3 | 66 | 22 | 7 | 8 | GCG, GGA |
PTHR1 | 3p22-p21.1 | 4 | 9 | 2.25 | 7 | 16 | GTAA, ACGC |
TGF-β1 | 19q13.1 | 3 | 22 | 7.33 | 4 | 8 | C+C, T+C- |
UCP3 | 11q13.4 | 3 | 5 | 1.67 | 4 | 8 | TCT, CTC |
VDR | 12q12-14 | 4 | 39 | 9.75 | 12 | 16 | GTGT, GTAC |