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Table 1 Genome placement, traits affected, and allele frequencies for all model trait loci

From: Genetic Analysis Workshop 13: Simulated longitudinal data on families for a system of oligogenic traits

Locus Name

 

Haldane Map Position (cM)

 

Allele Frequencies

 

Chrom.

Male

Female

Sex Ave

Trait(s) affected

A

B

C

D

Gb1

5

63.07

104.37

80.41

HT

0.40

0.30

0.30

 

Gb2

7

128.43

248.54

184.89

HT

0.70

0.30

  

Gb3

13

95.89

145.21

120.10

HT

0.50

0.50

  

Gb4

13

39.71

41.89

41.75

HT

0.85

0.15

  

Gb5

9

131.04

214.88

169.62

HT

0.70

0.30

  

Gb6

7

27.20

31.23

28.69

HT

0.90

0.10

  

Gb7

5

118.23

207.92

157.98

HT

0.50

0.30

0.20

 

Gb8

21

4.47

33.95

18.25

HT

0.20

0.80

  

Gb9

9

38.69

24.72

30.50

HT

0.50

0.50

  

Gb10

7

92.04

159.96

123.53

HT

0.50

0.30

0.20

 

Gb11

13

57.29

83.34

70.53

WT

0.40

0.30

0.20

0.10

Gb12

9

18.12

4.66

10.83

HDL, TG, GLUC

0.65

0.35

  

Gb13

9

65.43

105.28

82.76

HDL, TG, GLUC

0.50

0.30

0.10

0.10

Gb14

1

199.01

398.38

293.26

HDL, TG, GLUC

0.75

0.25

  

Gb15

21

34.93

66.97

49.65

HDL, TG, GLUC

0.45

0.35

0.20

 

Gb16

3

88.06

120.35

102.17

HDL, TG, GLUC

0.50

0.40

0.10

 

Gb17

1

63.06

143.18

100.73

HDL, TG, GLUC

0.40

0.30

0.30

 

Gb18

17

57.79

81.79

67.77

HDL, TG, GLUC

0.60

0.30

0.10

 

Gb19

17

44.99

18.83

31.14

HDL, TG, GLUC

0.70

0.20

0.10

 

Gb20

17

49.99

27.83

38.14

HDL

0.30

0.40

0.30

 

Gb21

11

47.00

42.93

45.14

HDL

0.80

0.20

  

Gb22

5

8.64

2.20

5.33

HDL

0.20

0.40

0.40

 

Gb23

19

107.83

128.20

114.52

TG

0.85

0.15

  

Gb24

15

50.70

37.69

43.84

TG

0.90

0.10

  

Gb25

1

108.85

218.67

160.75

TG

0.20

0.55

0.25

 

Gb26

7

15.77

5.57

10.35

GLUC

0.70

0.20

0.10

 

Gb27

3

48.64

36.61

41.84

GLUC

0.80

0.20

  

Gb28

3

144.79

222.50

180.81

GLUC

0.25

0.25

0.50

 

Gb29

17

55.98

73.57

62.89

GLUC

0.55

0.45

  

Gb30

11

60.03

73.31

66.19

CHOL

0.45

0.35

0.20

 

Gb31

1

114.67

238.40

172.93

CHOL

0.15

0.25

0.60

 

Gb32

15

107.90

146.91

124.76

CHOL

0.50

0.45

0.05

 

Gb33

3

49.10

43.87

45.53

CHOL

0.50

0.40

0.10

 

Gb34

5

126.71

237.14

176.08

SBP

0.70

0.30

  

Gb35

13

65.67

104.81

85.16

SBP

0.50

0.50

  

Gb36

7

44.79

51.35

47.49

SBP

0.80

0.20

  

Gb37

21

10.68

49.64

29.13

DBP

0.85

0.15

  

Gb38

7

6.53

1.02

3.64

DBP

0.90

0.10

  

Gs1

11

43.06

39.41

41.44

WT

0.75

0.25

  

Gs2

7

58.03

68.69

62.69

WT

0.15

0.70

0.15

 

Gs3

5

13.75

3.45

8.46

TG, GLUC

0.40

0.45

0.15

 

Gs4

9

53.45

66.06

58.02

TG, GLUC

0.30

0.30

0.40

 

Gs5

7

97.27

169.70

130.84

TG, GLUC

0.70

0.15

0.15

 

Gs6

21

2.26

17.52

9.04

TG, GLUC

0.60

0.30

0.10

 

Gs7

7

106.64

190.62

145.89

CHOL

0.60

0.30

0.10

 

Gs8

15

63.90

87.03

74.29

CHOL

0.40

0.30

0.30

 

Gs9

21

1.34

3.45

1.92

CHOL (FEMALE)

0.50

0.40

0.10

 

Gs10

21

41.26

68.75

53.59

SBP, DBP

0.70

0.30

  

Gs11

15

9.52

0.00

4.49

SBP, DBP

0.75

0.25

  

Gs12

21

10.95

50.03

29.46

SBP, DBP

0.80

0.20

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