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Table 1 New microsatellite markers and primers developed for this study.

From: Quantitative trait loci in Anopheles gambiae controlling the encapsulation response against Plasmodium cynomolgi Ceylon

Marker name

Genetic (Cytogenetic) location

Forward primer (5' – 3')

Repeat type

Reverse primer (5' – 3')

Sequenced allele size (bp)

Chromosome 2

     

H682

(2R, 7B)

CGGGCGGTCGTTATTAGGAG

(AC)7

CTGAGTTGACACGAGTTGCC

73

3F11-C1

(2R,9B)

AGATGGTGTCCTTCGGTGTC

(GT)17

GTGGAGGAGAAGCCACACAT

156

3B20-B1

(2L, 24B)

GAGACCAAAACATGTCAACCG

(CA)17

GTATGTCTGCGCATGAACGAT

122

R007

71.1 (2L, 26D)

GCACCAGTCAAATACGCACT

(CA)3+9

GTCCGTGTTGTTCGAAGATG

184

Chromosome 3

     

H249

11.9 (3R, 30A)

GGAAGCAGCTGCCTTTTATG

(TG)15

ACAATGTAACACAGCGCGAG

161

3A13-12

(3R, 30E)

GAACAAAACGTGCCACAGC

(GT)9

TCCCCGACTTACGTGAACC

168

3A7-37

(3R, 31B)

CGATTGGAACCAACAAGTGG

(CA)2+9

AAGCCATCTCTTGACGTTCG

151

Ddc*

(3R, 33B)

CGTTGAGAACCGAAAACAGG

(GT)10

ATCGGGACACTCAGCAACAG

121

3A6-17

(3R, 33C)

TGTGAAGAATGTTTTCGCTGAC

(AC)17

CTCCCCCGTGTAATTTGAAC

120

9D17-42

(3R, 33C)

TAAACCTCACCGTCCACATC

(TG)23+5

AAATTGAAACCCGTCCAAAG

150

6B10-1

(3R, 33D)

CATGAGTGCCGCTGTAAATG

(TG)2+16

ATCGCTCTCCTCCTCTAGCC

120

3A23-100

(3R, 34A)

AATGGACCATCGTTAGCACAG

(TG)12

TCCAAAGTTTTCCCTTCCAC

136

3L09-C1

(3L, 38C)

GAAACTTCCCTGAATTTCCGC

(CA)10+8

ATGGAGGCGACTAAACGTTGC

169

3A2-29

(3L, 41A)

GGCTGCTCTAGGAGGATGTG

(CT)16

AATCGAGGGTGGTGTGAATG

189

3O10-C2

(3L, 41D)

TTAATCACCCACCTTGATCGC

(CA)18

CCTAGAGCTTGGAATCGAATC

101

3A14-11

(3L, 43D)

GTAATAGCGAGCGAGCGAAC

(TG)36

GAGCGATCCGAATCGTTAGT

180

3A14-47

(3L, 43D)

GGAGGCACTCTACCACAACC

(GT)10

CCGAACGTCATCGCTAATG

104

3A19-32

(3L, 43D)

CGTGCTGGCATTAAAAAGTG

(CA)15

CTACGCATGCATCTTTCTCC

138

3A5-25

(3L, 45A)

CCTTGGGCGCTATAAAACAC

(TG)10

TATTAGCAGCAGGGGAAACC

131

19A18-54

(3L, 46A)

TAATGCAGTGGTGCGGTTC

(GT)5+6

AATCACAGCCCAGTCAGTCC

121

19C20-B1

(3L, 46B)

ACCAAGTGCTCTTTGGGTTG

(TG)15

ACGAATGCTGGACAATGTGA

141

  1. The cytogenetic location of H682 is A. gambiae scaffold predicted by it's location in AAAB01008987, contig 566 (GenBank accession AAAB01008987). New primer pairs were designed for markers R007 [44] and H249 [14]. Sequenced allele size is expressed in base pairs (bp). * This Dopa decarboxylase microsatellite is contained within the large first intron of predicted Ddc isoform 1. DNA sequence is from G3 strain (GenBank # AF063021; P. Romans, unpublished).