Table 4 Differential expression results showing significantly up-regulated transcripts in males over females in 3-5h samples (Comparison B) and 2-3h samples (Comparison D).
From: Comprehensive transcriptome analysis of early male and female Bactrocera jarvisi embryos
Comparison B | Â | Â | Normalized expression values (RPKM) | Â | Top BLAST hit | |||
|---|---|---|---|---|---|---|---|---|
Late only (3-5h), excl. BJ1 | Â | male | female | Â | ||||
Feature ID | Gene length | Fold Change (normalized values) | BJ2 | BJ3 | BJ4 | NCBI Accession No. | E-value | Gene / Source |
contig 22537 | 1546 | -109.63 | 185.79 | 0.1 | 3.29 | EQB46020 | 7.85E-55 | hypothetical protein CGLO_15009 [Colletotrichum gloeosporioides Cg-14] (fungal pathogen of plants) |
contig 26828 | 407 | -90.35 | 145.56 | 0 | 3.22 | ELT94824 | 2.06E-40 | hypothetical protein CAPTEDRAFT_122939, partial [Capitella teleta] (Annelid worm) |
contig 30721 | 521 | -44.23 | 68.22 | 0.39 | 2.7 | EEH16716 | 2.00E-28 | senescence-associated protein [Paracoccidioides brasiliensis Pb03] >gi|225678434|gb|EEH16718.1| (fungus) |
contig 47470 | 424 | -100.05 | 111.08 | 0.12 | 2.1 | XP_662849 | 3.93E-26 | hypothetical protein AN5245.2 [Aspergillus nidulans FGSC A4] >gi|40742997|gb|EAA62187.1| (fungus) |
contig 49000 | 222 | -39.38 | 131.19 | 0.96 | 5.71 | EHK21457 | 3.99E-41 | hypothetical protein TRIVIDRAFT_53758, partial [Trichoderma virens Gv29-8] (fungus) |
Comparison D | Â | Â | Â | Â | Â | Â | Â | Â |
Early only (2-3h), excl. BJ5 | Â | Â | Â | Â | Â | Â | Â | |
| Â | Â | Â | BJ6 | BJ7 | BJ8 | Â | Â | Â |
contig 31948 | 667 | -387.12 | 64.8 | 0.1 | 0.23 | CAJ30045 | 7.17E-28 | conserved hypothetical protein [Magnetospirillum gryphiswaldense MSR-1] (bacterium) |
contig 3465 | 234 | -20.53 | 29.21 | 0.57 | 2.28 | XP_004522331 | 3.36E-45 | PREDICTED: 60S acidic ribosomal protein P0-like [Ceratitis capitata] >gi|20139848|sp|Q9U3U0.1| |
contig 41160 | 210 | -70.11 | 37.85 | 0.33 | 0.75 | WP_006574328 | 1.06E-16 | hypothetical protein [Pseudoflavonifractor capillosus] >gi|150270408|gb|EDM97731.1(bacterium) |
contig 567 | 220 | -23.73 | 33.44 | 2.82 | 0 | ACN91520 | 2.50E-16 | eve [Bactrocera dorsalis] |