Table 2 The theoretical joint distribution probabilities of marker and QTL haplotypes.

MM

$p_{11}^2$

$2p_{11}{p}_{10}$

$p_{10}^2$

Mm

$2p_{11}{p}_{01}$

$2\left(p_{11}{p}_{00}+p_{10}{p}_{01}\right)$

$2p_{10}{p}_{00}$

mm

$p_{01}^2$

$2p_{01}{p}_{00}$

$p_{00}^2$