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Table 4 Predicted haplotype frequencies in the cohort using pyrosequencing or SSCP

From: Detection of three closely located single nucleotide polymorphisms in the EAAT2 promoter: comparison of single-strand conformational polymorphism (SSCP), pyrosequencing and Sanger sequencing

Pyrosequencing

SNP

Haplotype

C allele

Total alleles

-168 C > T

T

T

T

T

C

C

C

C

417

418

-181 A > C

A

A

C

C

A

A

C

C

204

418

-200 C > A

A

C

A

C

A

C

A

C

225

418

%

0.0

0.0

0.0

0.2

1.5

49.8

44.6

3.9

  
 

SSCP

 

SNP

Haplotype

C allele

Total alleles

    

-181 A > C

A

A

C

C

208

414

    

-200 C > A

A

C

A

C

205

414

    

%

0.2

49.5

50.2

0.0

      
  1. (Total number of ‘C’ alleles is indicated).