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Table 4 Analysis of Molecular variance (AMOVA) using Y-SNPs haplogroups and 17 Y-STRs for various groupings of populations

From: Taiwan Y-chromosomal DNA variation and its relationship with Island Southeast Asia

 

Grouping

Variation seen

   
  

Among populations

Within populations

   
  

Variance (%)

Fst

Variance (%)

   

Y-SNP

Han (East China)

1.17

0.01

98.83

   

TwMtA (9 tribes)

29.70*

0.30

70.30

   

TwPlt (Siraya, Pazeh)

3.76*

0.04

96.24

   

Ph (Luzon, Mindanao, Visayas)

1.90

0.02

98.10

   

Western IN (Borneo, Sumatra, Java)

5.70*

0.06

94.30

   

Indochina (Thai, Akha, Vietnam)

10.41*

0.10

89.59

   
   

Variation seen

  
 

Between groups

Among populations within groups

Within populations

Among all populations considering no grouping

 

Variance (%)

Fct

Variance (%)

Fsc

Variance (%)

Fst

Geographic grouping

      

TwMtA/Ph/Western IN/Han

18.09*

0.05

6.51*

0.14

75.40

0.18*

TwMtA/Ph/Western IN/Han/Indochina

16.83*

0.17

7.41*

0.09

75.76

0.24*

Linguistic grouping

      

TwMtA/Ph + Western IN/Han

18.55*

0.19

6.97*

0.086

74.48

0.26*

TwMtA/Ph + Western IN/Han/Indochina

17.19*

0.17

7.21*

0.09

75.59

0.24*

Y-STR

 

Variation seen

   
 

Among populations

Within populations

   
 

Variance (%)

Fst

Variance (%)

   

Han (East China)

0.18

<0.01

99.82

   

TwMtA (9 tribes)

31.78*

0.32

68.22

   

TwPlt (Siraya, Pazeh)

3.99*

0.04

96.01

   

Ph (Luzon, Mindanao, Visayas)

-0.84

-0.01

101.00

   

Western IN (Borneo, Sumatra, Java)

2.34*

0.02

97.66

   

Indochina (Thai, Akha, Vietnam)

11.26*

0.11

88.73

   
   

Variation seen

  
 

Between groups

Among populations within groups

Within populations

Among all populations considering no grouping

 

Variance (%)

Fct

Variance (%)

Fsc

Variance (%)

Fst

Geographic grouping

      

TwMtA/Ph/Western IN/Han

2.74*

0.03

12.99*

0.13

84.25

0.16*

TwMtA/Ph/Western IN/Han/Indochina

2.98*

0.03

12.74*

0.13

84.28

0.15*

Linguistic grouping

      

TwMtA/Ph + Western IN/Han

2.53*

0.03

13.29*

0.14

84.16

0.16*

TwMtA/Ph + Western IN/Han/Indochina

2.79*

0.03

13.01*

0.13

84.20

0.16*

  1. *P < 0.05 AMOVA test for Y-STR was based on 17 STR loci TwMtA: Taiwan mountain tribe Aborigines; TwPlt: Taiwan plain tribes; Ph: Philippines (Luzon, Mindanao, Visayas); Western IN: Western Indonesia (Borneo, Sumatra Java, Sulaweisi).