Table 4 Differential evolutionary pattern between upstream and downstream genes
From: Evolutionary study of the isoflavonoid pathway based on multiple copies analysis in soybean
Pathway position | Enzyme | Gene locus | π(%) | Average π(%) | P-valuea | dN(%) | Average dN(%) | P-valueb | dS(%) | Average dS(%) | P-valuec | dN/dS | LRT |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Upstream | PAL | Glyma19g36620(PAL1) | 0.16 | 0.07 | 0.04* | 0.01 | 0.01 | 0.01** | 0.63 | 0.28 | 0.46 | 0.02 | 0.00 |
| Â | Â | Glyma03g33890(PAL1) | 0.03 | Â | Â | 0.02 | Â | Â | 0.08 | Â | Â | 0.28 | 0.00 |
| Â | Â | Glyma10g06600(PAL2) | 0.07 | Â | Â | 0.00 | Â | Â | 0.30 | Â | Â | 0.00 | 0.00 |
| Â | C4H | Glyma14g38580 | 0.09 | Â | Â | 0.00 | Â | Â | 0.41 | Â | Â | 0.00 | 0.00 |
| Â | Â | Glyma02g40290 | 0.00 | Â | Â | 0.00 | Â | Â | 0.00 | Â | Â | 0/0 | 0.00 |
Downstream | IOMT | Glyma13g24210 | 0.22 | 0.28 | Â | 0.18 | 0.29 | Â | 0.35 | 0.26 | Â | 0.51 | 0.00 |
| Â | Â | Glyma18g50290 | 0.44 | Â | Â | 0.37 | Â | Â | 0.68 | Â | Â | 0.54 | 0.00 |
| Â | IFR | Glyma01g37840 | 0.20 | Â | Â | 0.26 | Â | Â | 0.00 | Â | Â | 0.26e-2/0 | 1.13 |
| Â | Â | Glyma04g01380 | 0.27 | Â | Â | 0.35 | Â | Â | 0.00 | Â | Â | 0.35e-2/0 | 25.15** |