Gene
|
Ecotype
|
Indel
|
SNP
|
S
|
πtot
|
θtot
|
dN/dS
|
D
|
D*
|
F*
|
---|
Wx
|
Glutinous
|
6
|
1
|
23
|
0.0053
|
0.0043
|
-
|
1.7295
|
1.7295
|
1.8583
|
|
Nonglutinous
|
17
|
7
|
31
|
0.0043
|
0.0033
| |
1.1825
|
0.9145
|
1.369
|
OsC1
|
Colored
|
2
|
1
|
6
|
0.0023
|
0.0020
|
-
|
0.8109
|
1.0088
|
1.1449
|
|
Colorless
|
3
|
8
|
10
|
0.0010
|
0.0021
|
1.00
|
−1.7683
|
−1.2847
|
−1.7178
|
- S, number of segregating sites; π, average number of nucleotide differences per site between two sequences [33] calculated on the total number of polymorphic sites (πtot); silent sites (πsil); synonymous sites (πsyn); nonsynonymous sites (πnonsyn); θ, Watterson’s estimator of nucleotide polymorphism per base pair [32] calculated on the total number of polymorphic sites (θtot); silent sites (θsil); synonymous sites (θsyn); nonsynonymous sites (θnonsyn); D, Tajima’s D[34]; D*, Fu and Li’s D*; F*, Fu and Li’s F* [35].
- Tajima’s D, *Fu and Li’s D* and F* not significant (P > 0.10).