TY - JOUR AU - Doebley, J. F. AU - Gaut, B. S. AU - Smith, B. D. PY - 2006 DA - 2006// TI - The molecular genetics of crop domestication JO - Cell VL - 127 UR - https://doi.org/10.1016/j.cell.2006.12.006 DO - 10.1016/j.cell.2006.12.006 ID - Doebley2006 ER - TY - JOUR AU - Konishi, S. AU - Izawa, T. AU - Lin, S. Y. AU - Ebana, K. AU - Fukuta, Y. AU - Sasaki, T. AU - Yano, M. PY - 2006 DA - 2006// TI - An SNP caused loss of seed shattering during rice domestication JO - Science VL - 312 UR - https://doi.org/10.1126/science.1126410 DO - 10.1126/science.1126410 ID - Konishi2006 ER - TY - JOUR AU - Li, C. AU - Zhou, A. AU - Sang, T. PY - 2006 DA - 2006// TI - Rice domestication by reducing shattering JO - Science VL - 311 UR - https://doi.org/10.1126/science.1123604 DO - 10.1126/science.1123604 ID - Li2006 ER - TY - JOUR AU - Sweeney, M. T. AU - Thomson, M. J. AU - Pfeil, B. E. AU - McCouch, S. PY - 2006 DA - 2006// TI - Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice JO - Plant Cell VL - 18 UR - https://doi.org/10.1105/tpc.105.038430 DO - 10.1105/tpc.105.038430 ID - Sweeney2006 ER - TY - JOUR AU - Yamanaka, S. AU - Nakamura, I. AU - Watanabe, K. N. AU - Sato, Y. I. PY - 2004 DA - 2004// TI - Identification of SNPs in the waxy gene among glutinous rice cultivars and their evolutionary significance during the domestication process of rice JO - Theor Appl Genet VL - 108 UR - https://doi.org/10.1007/s00122-003-1564-x DO - 10.1007/s00122-003-1564-x ID - Yamanaka2004 ER - TY - JOUR AU - Bradbury, L. M. AU - Fitzgerald, T. L. AU - Henry, R. J. AU - Jin, Q. AU - Waters, D. L. PY - 2005 DA - 2005// TI - The gene for fragrance in rice JO - Plant Biotechnol J VL - 3 UR - https://doi.org/10.1111/j.1467-7652.2005.00131.x DO - 10.1111/j.1467-7652.2005.00131.x ID - Bradbury2005 ER - TY - JOUR AU - Ashikari, M. AU - Sakakibara, H. AU - Lin, S. AU - Yamamoto, T. AU - Takashi, T. AU - Nishimura, A. AU - Angeles, E. R. AU - Qian, Q. AU - Kitano, H. AU - Matsuoka, M. PY - 2005 DA - 2005// TI - Cytokinin oxidase regulates rice grain production JO - Science VL - 309 UR - https://doi.org/10.1126/science.1113373 DO - 10.1126/science.1113373 ID - Ashikari2005 ER - TY - JOUR AU - Song, X. J. AU - Huang, W. AU - Shi, M. AU - Zhu, M. Z. AU - Lin, H. X. PY - 2007 DA - 2007// TI - A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase JO - Nat Genet VL - 39 UR - https://doi.org/10.1038/ng2014 DO - 10.1038/ng2014 ID - Song2007 ER - TY - JOUR AU - Eyre-Walker, A. AU - Gaut, R. L. AU - Hilton, H. AU - Feldman, D. L. AU - Gaut, B. S. PY - 1998 DA - 1998// TI - Investigation of the bottleneck leading to the domestication of maize JO - Proc Natl Acad Sci VL - 95 UR - https://doi.org/10.1073/pnas.95.8.4441 DO - 10.1073/pnas.95.8.4441 ID - Eyre-Walker1998 ER - TY - JOUR AU - Tanksley, S. D. AU - McCouch, S. R. PY - 1997 DA - 1997// TI - Seed banks and molecular maps: unlocking genetic potential from the wild JO - Science VL - 277 UR - https://doi.org/10.1126/science.277.5329.1063 DO - 10.1126/science.277.5329.1063 ID - Tanksley1997 ER - TY - BOOK AU - Simmonds, N. W. PY - 1976 DA - 1976// TI - Evolution of Crop Plants PB - Longman CY - New York ID - Simmonds1976 ER - TY - JOUR AU - Buckler, E. S. AU - Thornsberry, J. M. AU - Kresovich, S. PY - 2001 DA - 2001// TI - Molecular diversity, structure and domestication of grasses JO - Genet Res VL - 77 UR - https://doi.org/10.1017/S0016672301005158 DO - 10.1017/S0016672301005158 ID - Buckler2001 ER - TY - JOUR AU - Wang, R. L. AU - Stec, A. AU - Hey, J. AU - Lukens, L. AU - Doebley, J. PY - 1999 DA - 1999// TI - The limits of selection during maize domestication JO - Nature VL - 398 UR - https://doi.org/10.1038/18435 DO - 10.1038/18435 ID - Wang1999 ER - TY - JOUR AU - Tian, F. AU - Stevens, N. M. AU - Buckler, E. S. PY - 2009 DA - 2009// TI - Tracking footprints of maize domestication and evidence for a massive selective sweep on chromosome 10 JO - Proc Natl Acad Sci VL - 106 UR - https://doi.org/10.1073/pnas.0901122106 DO - 10.1073/pnas.0901122106 ID - Tian2009 ER - TY - JOUR AU - Olsen, K. M. AU - Caicedo, A. L. AU - Polato, N. AU - McClung, A. AU - McCouch, S. AU - Purugganan, M. D. PY - 2006 DA - 2006// TI - Selection under domestication: evidence for a sweep in the rice waxy genomic region JO - Genetics VL - 173 UR - https://doi.org/10.1534/genetics.106.056473 DO - 10.1534/genetics.106.056473 ID - Olsen2006 ER - TY - JOUR AU - Roder, W. AU - Keoboulapha, B. AU - Vannalath, K. AU - Phouaravanh, B. PY - 1996 DA - 1996// TI - Glutinous rice and its importance for hill farmers in Laos JO - Econ Bot VL - 50 UR - https://doi.org/10.1007/BF02866522 DO - 10.1007/BF02866522 ID - Roder1996 ER - TY - JOUR AU - Sano, Y. PY - 1984 DA - 1984// TI - Differential regulation of waxy gene expression in rice endosperm JO - Theor Appl Genet VL - 68 UR - https://doi.org/10.1007/BF00254822 DO - 10.1007/BF00254822 ID - Sano1984 ER - TY - JOUR AU - Hirano, H. Y. AU - Eiguchi, M. AU - Sano, Y. PY - 1998 DA - 1998// TI - A single base change altered the regulation of the Waxy gene at the posttranscriptional level during the domestication of rice JO - Mol Biol Evol VL - 15 UR - https://doi.org/10.1093/oxfordjournals.molbev.a026013 DO - 10.1093/oxfordjournals.molbev.a026013 ID - Hirano1998 ER - TY - JOUR AU - Isshiki, M. AU - Morino, K. AU - Nakajima, M. AU - Okagaki, R. J. AU - Wessler, S. R. AU - Izawa, T. AU - Shimamoto, K. PY - 1998 DA - 1998// TI - A naturally occurring functional allele of the rice waxy locus has a GT to TT mutation at the 5′ splice site of the first intron JO - Plant J VL - 15 UR - https://doi.org/10.1046/j.1365-313X.1998.00189.x DO - 10.1046/j.1365-313X.1998.00189.x ID - Isshiki1998 ER - TY - JOUR AU - Ayres, N. M. AU - McClung, A. M. AU - Larkin, P. D. AU - Bligh, H. F. J. AU - Jones, C. A. AU - Park, W. D. PY - 1997 DA - 1997// TI - Microsatellites and a single-nucleotide polymorphism differentiate apparentamylose classes in an extended pedigree of US rice germplasm JO - Theor Appl Genet VL - 94 UR - https://doi.org/10.1007/s001220050477 DO - 10.1007/s001220050477 ID - Ayres1997 ER - TY - JOUR AU - Wan, Y. X. AU - Deng, Q. M. AU - Wang, S. Q. AU - Liu, M. W. AU - Zhou, H. Q. AU - Li, P. PY - 2007 DA - 2007// TI - Genetic polymorphism of Wx gene and its correlation with main grain quality characteristics in rice JO - Rice Sci VL - 14 UR - https://doi.org/10.1016/S1672-6308(07)60013-4 DO - 10.1016/S1672-6308(07)60013-4 ID - Wan2007 ER - TY - JOUR AU - Wang, Z. F. AU - Zheng, F. Q. AU - Shen, G. Z. AU - Gao, J. P. AU - Snusted, D. P. AU - Li, M. G. AU - Zhang, J. L. AU - Hong, M. M. PY - 1995 DA - 1995// TI - The amylose content in rice endosperm is related to the post-transcriptional regulation of the waxy gene JO - Plant J VL - 7 UR - https://doi.org/10.1046/j.1365-313X.1995.7040613.x DO - 10.1046/j.1365-313X.1995.7040613.x ID - Wang1995 ER - TY - JOUR AU - Cai, X. L. AU - Wang, Z. Y. AU - Xing, Y. Y. AU - Zhang, J. L. AU - Hong, M. M. PY - 1998 DA - 1998// TI - Aberrant splicing of intron 1 leads to the heterogeneous 5′ UTR and decreased expression of waxy gene in rice cultivars of intermediate amylose content JO - Plant J VL - 14 UR - https://doi.org/10.1046/j.1365-313X.1998.00126.x DO - 10.1046/j.1365-313X.1998.00126.x ID - Cai1998 ER - TY - JOUR AU - Olsen, K. M. AU - Purugganan, M. D. PY - 2002 DA - 2002// TI - Molecular evidence on the origin and evolution of glutinous rice JO - Genetics VL - 162 ID - Olsen2002 ER - TY - JOUR AU - Dooner, H. K. AU - Robbins, T. P. AU - Jorgensen, R. A. PY - 1991 DA - 1991// TI - Genetic and developmental control of anthocyanin biosynthesis JO - Annu Rev Genet VL - 25 UR - https://doi.org/10.1146/annurev.ge.25.120191.001133 DO - 10.1146/annurev.ge.25.120191.001133 ID - Dooner1991 ER - TY - JOUR AU - Koes, R. E. AU - Quattrocchio, F. AU - Mol, J. N. PY - 1994 DA - 1994// TI - The flavonoid biosynthetic pathway in plants: function and evolution JO - BioEssays VL - 16 UR - https://doi.org/10.1002/bies.950160209 DO - 10.1002/bies.950160209 ID - Koes1994 ER - TY - JOUR AU - Saitoh, K. AU - Onishi, K. AU - Mikami, I. AU - Thidar, K. AU - Sano, Y. PY - 2004 DA - 2004// TI - Allelic diversification at the C (OsC1) Locus of wild and cultivated rice nucleotide changes associated with phenotypes JO - Genetics VL - 168 UR - https://doi.org/10.1534/genetics.103.018390 DO - 10.1534/genetics.103.018390 ID - Saitoh2004 ER - TY - JOUR AU - Doyle, J. J. AU - Doyle, J. L. PY - 1987 DA - 1987// TI - A rapid DNA isolation procedure for small quantities of fresh leaf tissue JO - Phytochem Bull VL - 19 ID - Doyle1987 ER - TY - JOUR AU - Dayanandan, S. AU - Bawa, K. S. AU - Kesseli, R. V. PY - 1997 DA - 1997// TI - Conservation of microsatellites among tropical trees (Leguminosae) JO - Am J Bot VL - 84 UR - https://doi.org/10.2307/2446463 DO - 10.2307/2446463 ID - Dayanandan1997 ER - TY - JOUR AU - Larkin, M. A. AU - Blackshields, G. AU - Brown, N. P. AU - Chenna, R. AU - McGettigan, P. A. AU - McWilliam, H. AU - Valentin, F. AU - Wallace, I. M. AU - Wilm, A. AU - Lopez, R. AU - Thompson, J. D. AU - Gibson, T. J. AU - Higgins, D. G. PY - 2007 DA - 2007// TI - Clustal W and Clustal X version 2.0 JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm404 DO - 10.1093/bioinformatics/btm404 ID - Larkin2007 ER - TY - JOUR AU - Librado, P. AU - Rozas, J. PY - 2009 DA - 2009// TI - DnaSP v5: a software for comprehensive analysis of DNA polymorphism data JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp187 DO - 10.1093/bioinformatics/btp187 ID - Librado2009 ER - TY - JOUR AU - Watterson, G. A. PY - 1975 DA - 1975// TI - On the number of segregating sites in genetical models without recombination JO - Theor Popul Biol VL - 7 UR - https://doi.org/10.1016/0040-5809(75)90020-9 DO - 10.1016/0040-5809(75)90020-9 ID - Watterson1975 ER - TY - BOOK AU - Nei, M. PY - 1987 DA - 1987// TI - Molecular Evolutionary Genetics PB - Columbia University Press CY - New York ID - Nei1987 ER - TY - JOUR AU - Tajima, F. PY - 1989 DA - 1989// TI - Statistical method for testing the neutral mutation hypothesis by DNA polymorphism JO - Genetics VL - 123 ID - Tajima1989 ER - TY - JOUR AU - Fu, Y. X. AU - Li, W. H. PY - 1993 DA - 1993// TI - Statistical tests of neutrality of mutations JO - Genetics VL - 133 ID - Fu1993 ER - TY - JOUR AU - McDonald, J. H. AU - Kreitman, M. PY - 1991 DA - 1991// TI - Adaptive protein evolution at the Adh locus in Drosophila JO - Nature VL - 351 UR - https://doi.org/10.1038/351652a0 DO - 10.1038/351652a0 ID - McDonald1991 ER - TY - JOUR AU - Shu, Q. Y. AU - Wu, D. X. AU - Xia, Y. W. AU - Gao, M. W. AU - Ayres, N. M. AU - Larkin, P. D. AU - Park, W. D. PY - 1999 DA - 1999// TI - Microsatellites polymorphism on the waxy gene locus and their relationship to amylose content in indica and japonica rice, Oryza sativa L JO - Acta Genet Sin VL - 26 ID - Shu1999 ER - TY - JOUR AU - Bao, J. S. AU - Corke, H. AU - Sun, M. PY - 2006 DA - 2006// TI - Microsatellites, single nucleotide polymorphisms and sequence tagged site in starchsynthesizing genes in relation to starch physiochemical properties in non-waxy rice (Oryza sativa L.) JO - Theor Appl Genet VL - 113 UR - https://doi.org/10.1007/s00122-006-0394-z DO - 10.1007/s00122-006-0394-z ID - Bao2006 ER - TY - JOUR AU - Doebley, J. AU - Stec, A. AU - Wendel, J. AU - Edwards, M. PY - 1990 DA - 1990// TI - Genetic and morphological analysis of a maize-teosinte F2 population: implications for the origin of maize JO - Proc Natl Acad Sci VL - 87 UR - https://doi.org/10.1073/pnas.87.24.9888 DO - 10.1073/pnas.87.24.9888 ID - Doebley1990 ER - TY - JOUR AU - Zhu, Y. AU - Ellstrand, N. C. AU - Lu, B. R. PY - 2012 DA - 2012// TI - Sequence polymorphisms in wild, weedy, and cultivated rice suggest seed-shattering locus sh4 played a minor role in Asian rice domestication JO - Ecol Evol VL - 2 UR - https://doi.org/10.1002/ece3.318 DO - 10.1002/ece3.318 ID - Zhu2012 ER - TY - JOUR AU - Wei-Hua, Q. AU - You-Tao, C. AU - Rong-Sheng, W. AU - Xin, W. AU - Li-Rong, C. AU - Wan-Xia, Z. AU - Qing-Wen, Y. PY - 2012 DA - 2012// TI - Nucleotide diversity in gene and validation of single nucleotide polymorphism in relation to amylose content in Chinese microcore rice germplasm JO - Crop Sci VL - 52 UR - https://doi.org/10.2135/cropsci2011.05.0292 DO - 10.2135/cropsci2011.05.0292 ID - Wei-Hua2012 ER - TY - JOUR AU - Zhang, D. AU - Zhang, H. AU - Wang, M. AU - Sun, J. AU - Qi, Y. AU - Wang, F. AU - Li, Z. PY - 2009 DA - 2009// TI - Genetic structure and differentiation of Oryza sativa L. in China revealed by microsatellites JO - Theor Appl Genet VL - 119 UR - https://doi.org/10.1007/s00122-009-1112-4 DO - 10.1007/s00122-009-1112-4 ID - Zhang2009 ER - TY - JOUR AU - Sigmon, B. AU - Vollbrecht, E. PY - 2010 DA - 2010// TI - Evidence of selection at the ramosa1 locus during maize domestication JO - Mol Ecol VL - 19 UR - https://doi.org/10.1111/j.1365-294X.2010.04562.x DO - 10.1111/j.1365-294X.2010.04562.x ID - Sigmon2010 ER - TY - JOUR AU - Inukai, T. AU - Sako, A. AU - Hirano, H. Y. AU - Sano, Y. PY - 2000 DA - 2000// TI - Analysis of intragenic recombination at wx in rice: correlation between the molecular and genetic maps within the locus JO - Genome VL - 43 UR - https://doi.org/10.1139/g00-015 DO - 10.1139/g00-015 ID - Inukai2000 ER - TY - JOUR AU - Zeng, M. AU - Morris, C. F. AU - Batey, I. L. AU - Wrigley, C. W. PY - 1997 DA - 1997// TI - Sources of variation for starch gelatinization, pasting, and gelation properties in wheat JO - Cereal Chem VL - 74 UR - https://doi.org/10.1094/CCHEM.1997.74.1.63 DO - 10.1094/CCHEM.1997.74.1.63 ID - Zeng1997 ER - TY - JOUR AU - Kiswara, G. AU - Lee, J. H. AU - Hur, Y. J. AU - Cho, J. H. AU - Lee, J. Y. AU - Kim, S. Y. AU - Kim, K. M. PY - 2014 DA - 2014// TI - Genetic analysis and molecular mapping of low amylose gene du12 (t) in rice (Oryza sativa L.) JO - Theor Appl Genet VL - 127 UR - https://doi.org/10.1007/s00122-013-2200-z DO - 10.1007/s00122-013-2200-z ID - Kiswara2014 ER - TY - JOUR AU - Teng, B. AU - Zhang, Y. AU - Wu, J. AU - Cong, X. AU - Wang, R. AU - Han, Y. AU - Luo, Z. PY - 2013 DA - 2013// TI - Association between allelic variation at the Waxy locus and starch physicochemical properties using single‒segment substitution lines in rice (Oryza sativa L.) JO - Starch-Starke VL - 65 UR - https://doi.org/10.1002/star.201300034 DO - 10.1002/star.201300034 ID - Teng2013 ER - TY - JOUR AU - Xu, F. AU - Zhang, G. AU - Tong, C. AU - Sun, X. AU - Corke, H. AU - Sun, M. AU - Bao, J. PY - 2013 DA - 2013// TI - Association mapping of starch physicochemical properties with starch biosynthesizing genes in waxy rice (Oryza sativa L.) JO - J Agric Food Chem VL - 61 UR - https://doi.org/10.1021/jf4029688 DO - 10.1021/jf4029688 ID - Xu2013 ER - TY - JOUR AU - Mikami, I. AU - Uwatoko, N. AU - Ikeda, Y. AU - Yamaguchi, J. AU - Hirano, H. Y. AU - Suzuki, Y. AU - Sano, Y. PY - 2008 DA - 2008// TI - Allelic diversification at the wx locus in landraces of Asian rice JO - Theor Appl Genet VL - 116 UR - https://doi.org/10.1007/s00122-008-0729-z DO - 10.1007/s00122-008-0729-z ID - Mikami2008 ER - TY - JOUR AU - Liu, A. AU - Burke, J. M. PY - 2006 DA - 2006// TI - Patterns of nucleotide diversity in wild and cultivated sunflower JO - Genetics VL - 173 UR - https://doi.org/10.1534/genetics.105.051110 DO - 10.1534/genetics.105.051110 ID - Liu2006 ER -