Table 1 Comparison of top SNPs associated with patellar luxation defined as binary trait or by estimated breeding value*
MAF | Single-SNP | Multi-SNP | ||||||
|---|---|---|---|---|---|---|---|---|
Chr | BP | SNP | Cases | Controls | PL status | EBV | PL status | EBV |
1 | 99888625 | BICF2S2314252 | 0.42 | 0.23 | 2.20 | 2.94 | 0.42 | 1.18 |
3 | 67056782 | BICF2P309055 | 0.16 | 0.43 | 4.01 | 2.90 | 3.97 | 0.22 |
4 | 16996349 | BICF2S23034244 | 0.17 | 0.45 | 4.24 | 4.67 | 0.41 | 0.16 |
7 | 17648777 | BICF2S2293048 | 0.18 | 0.46 | 4.20 | 2.77 | 0.65 | 0.04 |
7 | 18970233 | BICF2G630553500 | 0.12 | 0.41 | 4.79 | 4.54 | 0.57 | 0.21 |
7 | 19071723 | BICF2P1448362 | 0.14 | 0.44 | 4.64 | 4.34 | 0.39 | 0.26 |
7 | 19746349 | BICF2G630553889 | 0.12 | 0.46 | 6.06 | 4.83 | 1.30 | 0.69 |
7 | 20109002 | BICF2P1333659 | 0.13 | 0.46 | 5.65 | 4.52 | 1.07 | 0.31 |
7 | 20145907 | BICF2P1335550 | 0.13 | 0.46 | 5.65 | 4.52 | 1.22 | 0.40 |
7 | 21065761 | BICF2S23030368 | 0.13 | 0.45 | 5.33 | 4.87 | 0.81 | 0.31 |
7 | 22157845 | BICF2P233561 | 0.19 | 0.51 | 5.05 | 4.11 | 0.73 | 0.20 |
7 | 23113211 | BICF2P1060266 | 0.12 | 0.41 | 4.79 | 5.06 | 0.26 | 0.37 |
7 | 24186445 | BICF2P424667 | 0.12 | 0.41 | 4.79 | 5.06 | 0.33 | 0.24 |
7 | 25490867 | BICF2P205579 | 0.23 | 0.53 | 4.07 | 3.88 | 0.46 | 0.15 |
7 | 27099172 | BICF2S2457585 | 0.11 | 0.45 | 6.16 | 7.34 | 1.62 | 8.11 |
7 | 28293222 | BICF2P1386712 | 0.12 | 0.46 | 6.06 | 7.67 | 1.23 | 5.95 |
7 | 32710038 | BICF2G630555333 | 0.26 | 0.49 | 2.73 | 5.33 | 0.09 | 0.14 |
25 | 49858895 | BICF2P1461096 | 0.24 | 0.49 | 3.01 | 3.49 | 1.08 | 0.19 |
27 | 43484050 | BICF2G630153501 | 0.58 | 0.33 | 3.02 | 1.98 | 1.16 | 0.17 |
27 | 46605159 | BICF2G630154851 | 0.58 | 0.34 | 2.77 | 2.74 | 1.17 | 0.33 |
31 | 15166531 | BICF2S23135348 | 0.36 | 0.09 | 4.48 | 3.35 | 1.29 | 0.12 |
36 | 29549762 | BICF2S22944651 | 0.51 | 0.21 | 4.22 | 5.73 | 1.22 | 0.07 |
36 | 29608881 | BICF2G630757990 | 0.64 | 0.29 | 5.22 | 5.17 | 1.45 | 0.09 |