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Table 1 Comparison of top SNPs associated with patellar luxation defined as binary trait or by estimated breeding value*

From: Genome-wide survey indicates involvement of loci on canine chromosomes 7 and 31 in patellar luxation in flat-coated retrievers

  MAF Single-SNP Multi-SNP
Chr BP SNP Cases Controls PL status EBV PL status EBV
1 99888625 BICF2S2314252 0.42 0.23 2.20 2.94 0.42 1.18
3 67056782 BICF2P309055 0.16 0.43 4.01 2.90 3.97 0.22
4 16996349 BICF2S23034244 0.17 0.45 4.24 4.67 0.41 0.16
7 17648777 BICF2S2293048 0.18 0.46 4.20 2.77 0.65 0.04
7 18970233 BICF2G630553500 0.12 0.41 4.79 4.54 0.57 0.21
7 19071723 BICF2P1448362 0.14 0.44 4.64 4.34 0.39 0.26
7 19746349 BICF2G630553889 0.12 0.46 6.06 4.83 1.30 0.69
7 20109002 BICF2P1333659 0.13 0.46 5.65 4.52 1.07 0.31
7 20145907 BICF2P1335550 0.13 0.46 5.65 4.52 1.22 0.40
7 21065761 BICF2S23030368 0.13 0.45 5.33 4.87 0.81 0.31
7 22157845 BICF2P233561 0.19 0.51 5.05 4.11 0.73 0.20
7 23113211 BICF2P1060266 0.12 0.41 4.79 5.06 0.26 0.37
7 24186445 BICF2P424667 0.12 0.41 4.79 5.06 0.33 0.24
7 25490867 BICF2P205579 0.23 0.53 4.07 3.88 0.46 0.15
7 27099172 BICF2S2457585 0.11 0.45 6.16 7.34 1.62 8.11
7 28293222 BICF2P1386712 0.12 0.46 6.06 7.67 1.23 5.95
7 32710038 BICF2G630555333 0.26 0.49 2.73 5.33 0.09 0.14
25 49858895 BICF2P1461096 0.24 0.49 3.01 3.49 1.08 0.19
27 43484050 BICF2G630153501 0.58 0.33 3.02 1.98 1.16 0.17
27 46605159 BICF2G630154851 0.58 0.34 2.77 2.74 1.17 0.33
31 15166531 BICF2S23135348 0.36 0.09 4.48 3.35 1.29 0.12
36 29549762 BICF2S22944651 0.51 0.21 4.22 5.73 1.22 0.07
36 29608881 BICF2G630757990 0.64 0.29 5.22 5.17 1.45 0.09
  1. *MAF: minor allele frequency; Single-SNP associations are presented as –logp values; Multi-SNP associations as Bayesian factors.