Skip to main content

Table 1 Novel SNP or indels identified in the AR gene within the Brahman population using a small sample of high and low SC Brahman bulls

From: Evidence for positive selection of taurine genes within a QTL region on chromosome X associated with testicular size in Australian Brahman cattle

SNP

Position on chr. Xa

Gene Region

Base change B1-B2

Primer pair#

1

88,621,617

5′UTR

C - A

For 5UTR + Rev exon1

2

88,621,614

5′UTR

C - A

3

88,621,609*

5′UTR

: - T

4

88,621,605

5′UTR

: - T

5

88,619,468

Intron 1

G - A

For exon 1 + Rev intron 1

6

88,491,830*

Intron 2

C - T

For Intron 1 + Rev Intron 2

7

88,449,481

Intron 2

T - G

For Intron 2 + Rev Intron 3

8

88,418,830

Intron 4

G - A

For Intron 4 + Rev intron 5

9

88,418,772

Intron 4

C - T

10

88,418,724

Intron 4

C - T

11

88,418,702

Intron 4

G - A

12

88,411,385

Intron 6

A - G

For Intron 5 + Rev intron 6

13

88,411823

Intron 6

A - G

For Intron 6 + Rev Intron 7

14

88,411595

Intron 7

C - A

15

88,411,276*

Intron 7

T - A

16

88,411,702

3 UTR

C - T

For Intron 7 + Rev 3 UTR

  1. aBased up UMD3.1 Bovine Genome Assembly.
  2. *Not identified in bioinformatic analyses.
  3. #In naming of primers, “For” indicated a forward primer and “Rev” indicated a reverse primer.