Table 3 QTL conditions for the simulation of power to detect linked QTLs
| Â | Â | Â | Additive effect size | Location | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | P1 | P2 | P3 | P4 | P5 | P6 | P7 | P8 | Chr | cM |
Figure 5A, B (Repulsion) | Highest | QTL1 | 0.53 | 0.00 | 0.53 | 0.00 | 0.53 | 0.00 | 0.53 | 0.00 | 1 | 90 |
QTL2 | -0.53 | 0.00 | -0.53 | 0.00 | -0.53 | 0.00 | -0.53 | 0.00 | 1 | 90 + x | ||
Lowest | QTL1 | 0.53 | 0.53 | 0.53 | 0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 90 | |
QTL2 | -0.53 | -0.53 | -0.53 | -0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 90 + x | ||
Figure 5C (Coupling) | Highest | QTL1 | 0.53 | 0.00 | 0.53 | 0.00 | 0.53 | 0.00 | 0.53 | 0.00 | 1 | 90 |
QTL2 | 0.53 | 0.00 | 0.53 | 0.00 | 0.53 | 0.00 | 0.53 | 0.00 | 1 | 90 + x | ||
Lowest | QTL1 | 0.53 | 0.53 | 0.53 | 0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 90 | |
QTL2 | 0.53 | 0.53 | 0.53 | 0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 90 + x | ||
Highest | QTL1 | 0.27 | 0.00 | 0.27 | 0.00 | 0.27 | 0.00 | 0.27 | 0.00 | 1 | 90 | |
QTL2 | 0.27 | 0.00 | 0.27 | 0.00 | 0.27 | 0.00 | 0.27 | 0.00 | 1 | 90 + x | ||
| Â | Lowest | QTL1 | 0.27 | 0.27 | 0.27 | 0.27 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 90 |
QTL2 | 0.27 | 0.27 | 0.27 | 0.27 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 90 + x | ||
Figure 5E (Repulsion) | 4:4 | QTL1 | 0.53 | 0.53 | 0.53 | 0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 90 |
QTL2 | -0.53 | -0.53 | -0.53 | -0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 100 | ||
| Â | 3:2:3 | QTL1 | 0.61 | 0.61 | 0.61 | 0.30 | 0.30 | 0.00 | 0.00 | 0.00 | 1 | 90 |
QTL2 | -0.61 | -0.61 | -0.61 | -0.30 | -0.30 | 0.00 | 0.00 | 0.00 | 1 | 100 | ||
2:4:2 | QTL1 | 0.75 | 0.75 | 0.37 | 0.37 | 0.37 | 0.37 | 0.00 | 0.00 | 1 | 90 | |
QTL2 | -0.75 | -0.75 | -0.37 | -0.37 | -0.37 | -0.37 | 0.00 | 0.00 | 1 | 100 | ||
2:2:2:2 | QTL1 | 0.71 | 0.71 | 0.47 | 0.47 | 0.24 | 0.24 | 0.00 | 0.00 | 1 | 90 | |
QTL2 | -0.71 | -0.71 | -0.47 | -0.47 | -0.24 | -0.24 | 0.00 | 0.00 | 1 | 100 | ||
1:1:1:1:1:1:1:1 | QTL1 | 0.81 | 0.69 | 0.58 | 0.46 | 0.35 | 0.23 | 0.12 | 0.00 | 1 | 90 | |
QTL2 | -0.81 | -0.69 | -0.58 | -0.46 | -0.35 | -0.23 | -0.12 | 0.00 | 1 | 100 | ||
Figure 5F (Coupling) | 4:4 | QTL1 | 0.53 | 0.53 | 0.53 | 0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 90 |
QTL2 | 0.53 | 0.53 | 0.53 | 0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 100 | ||
3:2:3 | QTL1 | 0.61 | 0.61 | 0.61 | 0.30 | 0.30 | 0.00 | 0.00 | 0.00 | 1 | 90 | |
QTL2 | 0.61 | 0.61 | 0.61 | 0.30 | 0.30 | 0.00 | 0.00 | 0.00 | 1 | 100 | ||
2:4:2 | QTL1 | 0.75 | 0.75 | 0.37 | 0.37 | 0.37 | 0.37 | 0.00 | 0.00 | 1 | 90 | |
QTL2 | 0.75 | 0.75 | 0.37 | 0.37 | 0.37 | 0.37 | 0.00 | 0.00 | 1 | 100 | ||
2:2:2:2 | QTL1 | 0.71 | 0.71 | 0.47 | 0.47 | 0.24 | 0.24 | 0.00 | 0.00 | 1 | 90 | |
QTL2 | 0.71 | 0.71 | 0.47 | 0.47 | 0.24 | 0.24 | 0.00 | 0.00 | 1 | 100 | ||
1:1:1:1:1:1:1:1 | QTL1 | 0.81 | 0.69 | 0.58 | 0.46 | 0.35 | 0.23 | 0.12 | 0.00 | 1 | 90 | |
QTL2 | 0.81 | 0.69 | 0.58 | 0.46 | 0.35 | 0.23 | 0.12 | 0.00 | 1 | 100 | ||
Figure 6A (Repulsion) | 8-way AF 1/2 | QTL1 | 0.53 | 0.53 | 0.53 | 0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 90 |
QTL2 | -0.53 | -0.53 | -0.53 | -0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 100 | ||
8-way AF 1/8 | QTL1 | 0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 90 | |
QTL2 | -0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 100 | ||
2-way | QTL1 | 0.53 | 0.00 | - | - | - | - | - | - | 1 | 90 | |
QTL2 | -0.53 | 0.00 | - | - | - | - | - | - | 1 | 100 | ||
Figure 6B (Coupling) | 8-way AF 1/2 | QTL1 | 0.53 | 0.53 | 0.53 | 0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 90 |
QTL2 | 0.53 | 0.53 | 0.53 | 0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 100 | ||
8-way AF 1/8 | QTL1 | Â | Â | Â | Â | Â | Â | Â | Â | 1 | 90 | |
QTL2 | 0.53 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1 | 100 | ||
2-way | QTL1 | 0.53 | 0.00 | - | - | - | - | - | - | 1 | 90 | |
| Â | Â | QTL2 | -0.53 | 0.00 | - | - | - | - | - | - | 1 | 100 |