Genome-wide association studies for hematological traits in Chinese Sutai pigs

BMC Genomic Data

Table 3 Description of lead SNPs showing significant association with hematological traits by LDLA

Traits¹	Peak SNP	Num²	Chr³	Pos (bp)⁴	Nearest gene⁵	Distance (bp)⁶	P-value
HCT^**	ss107842725	331	7	24777963	ENSSSCG00000001232	Within	1.28E-08
RBC^**	ss107842725	180	7	24777963	ENSSSCG00000001232	Within	1.20E-07
MCH^*	ss478941323	60	5	61925570	GRIN2B	144801	3.05E-06
MCV^*	ss107842725	68	7	24777963	ENSSSCG00000001232	Within	1.47E-06
RDW-SD^*	ss131114130	13	9	33331814	ENSSSCG00000014974	3311	1.89E-05
WBC^*	ss131152863	1	1	289943447	TLR4	157600	1.49E-05

The associated region was defined as the interval the distances between two adjacent genome-wide significant SNPs was less than 10 Mb.
¹The abbreviations of hematological traits are given in Table 1. e.g. MCV is Mean corpuscular volume.
²The number of significant SNPs for each hematological trait.
^{3, 4}Chromosomal locations and positions of the most significant SNP associated with hematological traits in Sus scrofa Build 10.2 assembly.
⁵The nearest annotated gene to the significant SNP. The annotated gene database is from http://asia.ensembl.org/index.html.
⁶SNP designated as in a gene or distance (bp) from a gene region in Sus scrofa Build 10.2 assembly, “0” in column 6 represent un-annotated genes.
^**Genome-wide significant.
^*Chromosome-wide significant.

ISSN: 2730-6844