From: Genome-wide association study for intramuscular fat deposition and composition in Nellore cattle
Group | Traits | QTL window (first and last SNP) | Number of SNP /window1 | %Variance explained SNP window1 | Chr | Map position (UMD 3.1 bovine assembly) | PCG2 |
---|---|---|---|---|---|---|---|
Saturated fatty acid | C14:0 | rs43328164 - rs134696015 | 295 | 1.06 | 3 | 6009105 - 6999643 | - 3 |
 | C18:0 | rs133274959 - rs136576856 | 213 | 3.46 | 3 | 25008982 - 25990012 | HMGCS2, PHGDH, HSD3B1, HAO2 |
 | C16:0 | rs134160160 - rs109942510 | 285 | 1.38 | 3 | 26002777 - 26998679 | WARS2 |
 | C14:0 | rs41627556 - rs110731616 | 332 | 1.43 | 9 | 36013595 - 36997263 | GNG11, RGS5 |
 | C18:0 | rs136405986 - rs137105475 | 114 | 1.08 | 10 | 74001100 - 74957582 | DHRS7 |
 | C18:0 | rs132804279 - rs109645596 | 102 | 2.08 | 11 | 105009792 - 105985714 | NUP214 |
 | C16:0 | rs109773631 - rs135618512 | 277 | 1.53 | 12 | 13000697 - 13997298 | - |
 | C12:0 | rs42924061 - rs134942057 | 214 | 3.48 | 12 | 60000226 - 60994461 | SLITRK6 |
Monounsat. fatty acid | C14:1 cis-9 | rs137683417 - rs29003360 | 232 | 1.86 | 2 | 26002605 - 26999718 | GAD1, Sp5 |
 | C18:1 cis-9 | rs134160160 - rs109942510 | 285 | 1.40 | 3 | 26002777 - 26998679 | WARS2 |
 | C16:1 cis-9 | rs133274959-rs136576856 | 213 | 1.42 | 3 | 25008982 - 25990012 | HMGCS2, PHGDH, HSD3B1, HAO2 |
 | C18:1 cis-9 | rs133274959-rs136576856 | 213 | 2.57 | 3 | 25008982 - 25990012 | HMGCS2, PHGDH, HSD3B1, HAO2 |
 | C18:1 t-16 | rs133728493 - rs109630757 | 264 | 2.56 | 6 | 50008629 - 50996673 | - |
 | C16:1cis-9 | rs135892505 - rs109693564 | 184 | 1.04 | 7 | 80006438 - 80997126 | - |
 | C16:1cis-9 | rs136405986 - rs137105475 | 114 | 1.18 | 10 | 74001100 - 74957582 | DHRS7 |
 | C14:1cis-9 | rs110517663 - rs137137362 | 127 | 1.43 | 11 | 27000446 - 27993515 | ABCG5 |
 | C18:1 cis-9 | rs109773631 - rs135618512 | 277 | 1.91 | 12 | 13000697 - 13997298 | - |
 | C14:1 cis-9 | rs137754875 - rs135670282 | 203 | 1.55 | 12 | 66002783 - 66997356 | GPC6 |
 | C18:1 t-16 | rs109872854 - rs134277482 | 250 | 2.17 | 17 | 41001273 - 41991683 | RAPGEF2, RPS27 |
Polyunsat. fatty acid | C22:5 n-3 | rs132839318 - rs134264692 | 306 | 3.35 | 3 | 27001604 - 27997941 | SPAG7, WDR3 |
 | C18:2 t-11c-15 | rs42404785 - rs133183089 | 144 | 1.69 | 3 | 72000121 - 72997801 | AQP7, LOXL2 |
 | C18:3 n-6 | rs109612389 - rs133661384 | 205 | 1.34 | 7 | 34004443 - 34998434 | - |
 | C18:2 t-11c-15 | rs135377389 - rs133297940 | 267 | 3.49 | 8 | 68013821 - 68993778 | - |
 | C22:5 n-3 | rs110411459 - rs137802105 | 202 | 4.74 | 10 | 29000222 - 29962997 | - |
 | C20:5 n-3 | rs137823965 - rs42507195 | 199 | 2.19 | 10 | 49005824 - 49980174 | RORA |
 | C18:3 n-3 | rs42582725 - rs133775322 | 132 | 1.33 | 17 | 24002089 - 24987264 | - |
 | C18:2 t-11c-15 | rs137602675 - rs133056879 | 187 | 1.01 | 26 | 20001875 - 20999270 | - |
 | C20:3 n-6 | rs134302284 - rs136338106 | 144 | 1.77 | 27 | 26000833 - 26975692 | - |
Total of MUFA | MUFA | rs133274959 - rs136576856 | 213 | 3.24 | 3 | 25008982 - 25990012 | HMGCS2, PHGDH, HSD3B1, HAO2 |
 |  | rs134160160 - rs109942510 | 285 | 1.13 | 3 | 26002777 - 26998679 | WARS2 |
Total of n-3 | n-3 | rs110411459 - rs137802105 | 202 | 2.59 | 10 | 29000222 - 29962997 | - |
 |  | rs137823965 - rs42507195 | 199 | 2.25 | 10 | 49005824 - 49980174 | - |
 |  | rs1322839318 - rs134264692 | 306 | 1.37 | 3 | 27001604 - 27997941 | SPAG7, WDR3 |
Total of n-6 | n-6 | rs134302284 - rs136338106 | 144 | 2.47 | 27 | 26000833 - 26975692 | - |