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Table 1 Genotyped markers, frequencies of alleles and genotypes, and test for Hardy-Weinberg equilibrium

From: Associations between variants of FADS genes and omega-3 and omega-6 milk fatty acids of Canadian Holstein cows

Marker1 Location/characteristic of SNP Allele Count Frequency Genotype Count Frequency Test for HWE
Lab Id rs#   P-values
FADS1-01 rs136261927 Intron C 685 0.812 CC 275 0.652 0.4181
    T 159 0.188 CT 135 0.320  
       TT 12 0.028  
FADS1-07 rs42187261 Exon, synonymous (306Tyr > Tyr) C 349 0.428 CC 70 0.172 0.3695
   T 467 0.572 CT 209 0.512  
       TT 129 0.316  
FADS1-08 rs41652284 Intron C 626 0.742 CC 226 0.536 0.1289
    T 218 0.258 CT 174 0.412  
       TT 22 0.052  
FADS2-05 rs211263660 Intron (splice site) C 523 0.612 CC 163 0.382 0.6135
    T 331 0.388 CT 197 0.461  
       TT 67 0.157  
FADS2-14 rs211580559 Exon, non synonymous (294 Ala > Val) C 517 0.597 CC 159 0.367 0.3746
   T 349 0.403 CT 199 0.460  
       TT 75 0.173  
FADS2-19 rs210169303 3′UTR (microRNA binding site) C 589 0.731 CC 219 0.543 0.3764
    T 217 0.269 CT 151 0.375  
       TT 33 0.082  
FADS2-23 rs109772589 3′UTR A 673 0.807 AA 267 0.640 0.2099
    G 161 0.193 AG 139 0.333  
       GG 11 0.026  
  1. 1Lab Id = lab notation of SNPs, rs# = reference SNP ID number.