No. of SNPs selected
|
|
|
|
|
---|
100
|
1798.9 (193.8) ± 90.7
|
289.9 (26.4) ± 78.1
|
2088.8 (103.2) ± 112.9
|
0.14 ± 0.03
|
200
|
1737.7 (187.2) ± 91.1
|
322.4 (29.4) ± 76.1
|
2060.0 (101.8) ± 107.7
|
0.16 ± 0.03
|
500
|
1447.0 (155.9) ± 86.0
|
586.8 (53.5) ± 102.5
|
2033.7 (100.5) ± 109.3
|
0.29 ± 0.04
|
1,000
|
1290.3 (139.0) ± 90.1
|
745.1 (68.0) ± 121.9
|
2035.4 (100.5) ± 111.3
|
0.36 ± 0.05
|
2,000
|
1168.5 (125.9) ± 96.6
|
844.9 (77.1) ± 135.8
|
2013.4 (99.5) ± 110.6
|
0.42 ± 0.05
|
4,000
|
1025.2 (110.5) ± 107.7
|
1008.6 (92.0) ± 160.7
|
2033.8 (100.5) ± 114.7
|
0.49 ± 0.06
|
6,000
|
1028.9 (110.9) ± 107.5
|
980.0 (89.4) ± 155.5
|
2009.0 (99.2) ± 111.2
|
0.49 ± 0.06
|
8,000
|
992.1 (106.9) ± 113.0
|
1032.1 (94.1) ± 165.5
|
2024.2 (100.0) ± 113.3
|
0.51 ± 0.06
|
10,000
|
956.4 (103.1) ± 112.5
|
1065.1 (97.2) ± 166.7
|
2021.5 (99.9) ± 113.5
|
0.53 ± 0.06
|
20,000
|
895.6 (96.5) ± 117.1
|
1137.0 (103.7) ± 176.7
|
2032.6 (100.4) ± 115.5
|
0.56 ± 0.07
|
30,000
|
915.8 (98.7) ± 117.2
|
1112.6 (101.5) ± 174.2
|
2028.5 (100.2) ± 114.3
|
0.55 ± 0.07
|
38,502
|
928.1 (100) ± 117.6
|
1096.3 (100) ± 173.5
|
2024.4 (100) ±113.7
|
0.54 ± 0.07
|
Imp1*2
|
867.2 (93.4) ± 119.7
|
1166.6 (106.4) ± 180.3
|
2033.8 (100.5) ± 115.6
|
0.57 ± 0.07
|
Imp2*2
|
931.1 (100.3) ± 118.0
|
1093.9 (99.8) ± 173.5
|
2025.0 (100.0) ± 113.7
|
0.54 ± 0.07
|
- *1Values in parentheses represent the percentage relative to the estimate obtained with model 1 incorporating the G matrix constructed using all available SNPs.
- *2Imp1 and imp2: 38,502 SNP genotypes imputed from 4,000 and 10,000 SNPs, respectively.