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Table 5 SNP and haplotype pattern in the adjacent fragments F3H_1 and GM022 of the flavanone 3-hydroxylase (F3H) encoding gene revealed by gel electrophoresis (296 bp InDel) and by pyrosequencing assays in a set of 190 European barley cultivars and the mapping parents Steptoe and Morex

From: Development of SNP markers for genes of the phenylpropanoid pathway and their association to kernel and malting traits in barley

Haplotypes

SNPs/IDs from 5' to 3'

Haplotype frequency (No. of cultivars) according row number and growth habit

Haplotype frequency (No. of cultivars)

 

F3H1_ID3

F3H1_ID4

F3H1_SNP36

F3H1_SNP37

F3H1_SNP38

F3H1_SNP39

GM022_SNP1

GM022_SNP2

GM022_SNP3

2r-S

6r-S

2r-W

6r-W

 
 

Intron

Intron

Intron

Intron

Intron

Intron

Intron

Intron

Exon

  

F3H_H1

296 bp insert

–

C

C

C

G

C

C

C (Leu)

15

1

59

31

106

F3H_H2

–

AT

T

C

G

A

G

A

C (Leu)

29

1

1

1

32

F3H_H3

296 bp insert

–

C

C

G

G

G

A

T (Leu)

28

–

1

1

30

F3H_H4

–

AT

C

A

G

A

G

A

C (Leu)

13

–

–

–

13

Unknown

Missing SNP information

9

 

–

2

8

Total

         

94

2

61

35

192

  1. Coding amino acids are given in brackets. ID = Insertion/Deletion, S = Spring, W = Winter, 2r = two-rowed, 6r = six-rowed.
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BMC Genomic Data

ISSN: 2730-6844

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