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Table 8 Additive 1 estimates of SNPs within genes that have diet-dependent association 2 with feed efficiency

From: Single nucleotide polymorphisms and haplotypes associated with feed efficiency in beef cattle

Indicator SNP BTA Allele Gene symbol Gene name Diet3 P-Value
       A B C D  
RFI rs108942504 22 A/G* TMEM40 transmembrane protein 40 0.27 ± 0.08 0.28 ± 0.08 0.29 ± 0.09 0.22 ± 0.08 1.66E-05
RADG rs43474365 7 A/G* SLC12A2 solute carrier family 12 (sodium/potassium/chloride transporters), member 2 0.00 ± 0.01 −0.03 ± 0.01 0.01 ± 0.01 −0.03 ± 0.01 4.11E-05
RIG rs108942504 22 A/G* TMEM40 transmembrane protein 40 −0.51 ± 0.12 −0.40 ± 0.11 −0.46 ± 0.14 −0.32 ± 0.12 5.80E-05
EI rs41593945 4 A*/C CNPY1 canopy 1 homolog −0.04 ± 0.07 −0.16 ± 0.07 0.22 ± 0.07 −0.02 ± 0.07 4.80E-05
  rs108942504 22 A/G* TMEM40 transmembrane protein 40 0.21 ± 0.08 0.23 ± 0.07 0.24 ± 0.09 0.18 ± 0.08 8.28E-05
  rs42072585 25 A/G* CLN3 ceroid-lipofuscinosis, neuronal 3 0.18 ± 0.06 0.21 ± 0.06 0.36 ± 0.06 0.27 ± 0.06 7.02E-05
EG rs109291606 12 G/T* ENOX1 ecto-NOX disulfide-thiol exchanger 1 0.04 ± 0.01 0.04 ± 0.01 0.04 ± 0.01 0.02 ± 0.01 8.93E-05
  1. 1Contrast of the additive estimate between each level of diet and diet E, relative to the minor allele.
  2. 2P-value < 0.0001.
  3. 3Estimate ± standard error.
  4. *Minor allele.