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Table 7 Additive 1 estimates of SNPs within genes that have breed-dependent association 2 with feed efficiency

From: Single nucleotide polymorphisms and haplotypes associated with feed efficiency in beef cattle

Indicator

SNP

BTA

Allele

Gene symbol

Gene name

Breed3

P-Value

      

AN

3/4 AN

AN/SM

3/4 SM

 

RFI

rs110425294

5

A/G*

AVIL

Advillin

−0.09 ± 0.06

0.09 ± 0.06

0.13 ± 0.05

−0.23 ± 0.08

5.71E-05

 

rs42456314

12

A/G*

GPC5

Glypican 5

−0.08 ± 0.07

−0.27 ± 0.07

−0.20 ± 0.06

−0.57 ± 0.08

2.69E-05

 

rs29024448

17

G/T*

RFC5

Replication factor C (activator 1) 5, 36.5 kDa

0.14 ± 0.06

0.31 ± 0.06

0.05 ± 0.05

0.20 ± 0.07

8.32E-06

 

rs108942504

22

A/G*

TMEM40

Transmembrane protein 40

0.05 ± 0.13

0.15 ± 0.12

0.17 ± 0.10

0.53 ± 0.13

3.07E-06

RADG

rs109808044

3

A*/G

SNED1

Sushi, nidogen and EGF-like domains 1

−0.04 ± 0.01

−0.08 ± 0.01

−0.01 ± 0.01

−0.03 ± 0.01

2.44E-05

 

rs110742206

3

C/T*

CSMD2

CUB and Sushi multiple domains 2

0.11 ± 0.03

0.11 ± 0.03

0.08 ± 0.02

0.23 ± 0.04

1.98E-05

 

rs110690110

5

C*/G

ERC1

ELKS/RAB6-interacting/CAST family member 1

−0.03 ± 0.01

−0.05 ± 0.01

−0.02 ± 0.01

−0.07 ± 0.01

2.49E-05

 

rs110280556

6

A*/G

UNC5C

Unc-5 homolog C (C. elegans)

−0.02 ± 0.01

−0.03 ± 0.01

0.00 ± 0.01

0.05 ± 0.01

6.65E-06

 

rs41583989

24

C*/T

DTNA

Dystrobrevin, alpha

−0.07 ± 0.02

0.04 ± 0.02

−0.02 ± 0.01

−0.04 ± 0.02

9.20E-05

RIG

rs110131536

2

A*/G

IGFBP5

Insulin-like growth factor binding protein 5

0.33 ± 0.14

0.40 ± 0.13

0.47 ± 0.12

−0.69 ± 0.20

2.30E-05

 

rs110280556

6

A*/G

UNC5C

Unc-5 homolog C (C. elegans)

−0.13 ± 0.08

−0.11 ± 0.08

0.06 ± 0.06

0.62 ± 0.11

3.88E-05

 

rs41625438

12

C/T*

DACH1

Dachshund homolog 1 (Drosophila)

0.06 ± 0.15

0.03 ± 0.15

0.05 ± 0.13

1.08 ± 0.21

8.82E-05

 

rs42456314

12

A/G*

GPC5

Glypican 5

0.22 ± 0.10

0.41 ± 0.10

0.36 ± 0.08

0.90 ± 0.12

2.35E-06

 

rs41623603

16

A*/C

CNST

Consortin, connexin sorting protein

0.08 ± 0.10

0.10 ± 0.11

0.19 ± 0.09

−0.36 ± 0.13

5.13E-05

 

rs29024448

17

G*/T

RFC5

Replication factor C (activator 1) 5, 36.5 kDa

−0.15 ± 0.09

−0.48 ± 0.09

−0.09 ± 0.07

−0.32 ± 0.11

1.71E-05

EI

rs109053103

5

A*/G

BIN2

Bridging integrator 2-like

0.28 ± 0.08

0.28 ± 0.08

−0.01 ± 0.06

0.36 ± 0.10

8.57E-05

 

rs42456314

12

A/G*

GPC5

Glypican 5

−0.10 ± 0.07

−0.26 ± 0.07

−0.21 ± 0.06

−0.55 ± 0.08

3.13E-05

 

rs29024448

17

G*/T

RFC5

Replication factor C (activator 1) 5, 36.5 kDa

0.11 ± 0.06

0.30 ± 0.06

0.07 ± 0.05

0.19 ± 0.07

3.23E-05

 

rs108942504

22

A/G*

TMEM40

Transmembrane protein 40

0.05 ± 0.12

0.09 ± 0.11

0.16 ± 0.10

0.48 ± 0.13

8.72E-06

 

rs110206384

X

A/G*

F8

Coagulation factor VIII, procoagulant component

0.17 ± 0.05

−0.07 ± 0.05

−0.02 ± 0.04

0.01 ± 0.07

5.48E-05

EG

rs110742206

3

C/T*

CSMD2

CUB and Sushi multiple domains 2

0.54 ± 0.13

0.46 ± 0.12

0.35 ± 0.11

1.08 ± 0.17

7.31E-05

 

rs42250803

17

A*/G

SLC7A11

Solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11

0.06 ± 0.06

−0.06 ± 0.05

0.02 ± 0.04

−0.31 ± 0.06

2.23E-05

  1. 1Contrast of the additive estimate between each level of breed and breed SM, relative to the minor allele.
  2. 2P-value < 0.0001.
  3. 3Estimate ± standard error.
  4. *Minor allele.