From: Single nucleotide polymorphisms and haplotypes associated with feed efficiency in beef cattle
Indicator | SNP | BTA | Allele | Gene symbol | Gene name | Breed3 | P-Value | |||
---|---|---|---|---|---|---|---|---|---|---|
AN | 3/4 AN | AN/SM | 3/4 SM | |||||||
RFI | rs110425294 | 5 | A/G* | AVIL | Advillin | −0.09 ± 0.06 | 0.09 ± 0.06 | 0.13 ± 0.05 | −0.23 ± 0.08 | 5.71E-05 |
rs42456314 | 12 | A/G* | GPC5 | Glypican 5 | −0.08 ± 0.07 | −0.27 ± 0.07 | −0.20 ± 0.06 | −0.57 ± 0.08 | 2.69E-05 | |
rs29024448 | 17 | G/T* | RFC5 | Replication factor C (activator 1) 5, 36.5 kDa | 0.14 ± 0.06 | 0.31 ± 0.06 | 0.05 ± 0.05 | 0.20 ± 0.07 | 8.32E-06 | |
rs108942504 | 22 | A/G* | TMEM40 | Transmembrane protein 40 | 0.05 ± 0.13 | 0.15 ± 0.12 | 0.17 ± 0.10 | 0.53 ± 0.13 | 3.07E-06 | |
RADG | rs109808044 | 3 | A*/G | SNED1 | Sushi, nidogen and EGF-like domains 1 | −0.04 ± 0.01 | −0.08 ± 0.01 | −0.01 ± 0.01 | −0.03 ± 0.01 | 2.44E-05 |
rs110742206 | 3 | C/T* | CSMD2 | CUB and Sushi multiple domains 2 | 0.11 ± 0.03 | 0.11 ± 0.03 | 0.08 ± 0.02 | 0.23 ± 0.04 | 1.98E-05 | |
rs110690110 | 5 | C*/G | ERC1 | ELKS/RAB6-interacting/CAST family member 1 | −0.03 ± 0.01 | −0.05 ± 0.01 | −0.02 ± 0.01 | −0.07 ± 0.01 | 2.49E-05 | |
rs110280556 | 6 | A*/G | UNC5C | Unc-5 homolog C (C. elegans) | −0.02 ± 0.01 | −0.03 ± 0.01 | 0.00 ± 0.01 | 0.05 ± 0.01 | 6.65E-06 | |
rs41583989 | 24 | C*/T | DTNA | Dystrobrevin, alpha | −0.07 ± 0.02 | 0.04 ± 0.02 | −0.02 ± 0.01 | −0.04 ± 0.02 | 9.20E-05 | |
RIG | rs110131536 | 2 | A*/G | IGFBP5 | Insulin-like growth factor binding protein 5 | 0.33 ± 0.14 | 0.40 ± 0.13 | 0.47 ± 0.12 | −0.69 ± 0.20 | 2.30E-05 |
rs110280556 | 6 | A*/G | UNC5C | Unc-5 homolog C (C. elegans) | −0.13 ± 0.08 | −0.11 ± 0.08 | 0.06 ± 0.06 | 0.62 ± 0.11 | 3.88E-05 | |
rs41625438 | 12 | C/T* | DACH1 | Dachshund homolog 1 (Drosophila) | 0.06 ± 0.15 | 0.03 ± 0.15 | 0.05 ± 0.13 | 1.08 ± 0.21 | 8.82E-05 | |
rs42456314 | 12 | A/G* | GPC5 | Glypican 5 | 0.22 ± 0.10 | 0.41 ± 0.10 | 0.36 ± 0.08 | 0.90 ± 0.12 | 2.35E-06 | |
rs41623603 | 16 | A*/C | CNST | Consortin, connexin sorting protein | 0.08 ± 0.10 | 0.10 ± 0.11 | 0.19 ± 0.09 | −0.36 ± 0.13 | 5.13E-05 | |
rs29024448 | 17 | G*/T | RFC5 | Replication factor C (activator 1) 5, 36.5 kDa | −0.15 ± 0.09 | −0.48 ± 0.09 | −0.09 ± 0.07 | −0.32 ± 0.11 | 1.71E-05 | |
EI | rs109053103 | 5 | A*/G | BIN2 | Bridging integrator 2-like | 0.28 ± 0.08 | 0.28 ± 0.08 | −0.01 ± 0.06 | 0.36 ± 0.10 | 8.57E-05 |
rs42456314 | 12 | A/G* | GPC5 | Glypican 5 | −0.10 ± 0.07 | −0.26 ± 0.07 | −0.21 ± 0.06 | −0.55 ± 0.08 | 3.13E-05 | |
rs29024448 | 17 | G*/T | RFC5 | Replication factor C (activator 1) 5, 36.5 kDa | 0.11 ± 0.06 | 0.30 ± 0.06 | 0.07 ± 0.05 | 0.19 ± 0.07 | 3.23E-05 | |
rs108942504 | 22 | A/G* | TMEM40 | Transmembrane protein 40 | 0.05 ± 0.12 | 0.09 ± 0.11 | 0.16 ± 0.10 | 0.48 ± 0.13 | 8.72E-06 | |
rs110206384 | X | A/G* | F8 | Coagulation factor VIII, procoagulant component | 0.17 ± 0.05 | −0.07 ± 0.05 | −0.02 ± 0.04 | 0.01 ± 0.07 | 5.48E-05 | |
EG | rs110742206 | 3 | C/T* | CSMD2 | CUB and Sushi multiple domains 2 | 0.54 ± 0.13 | 0.46 ± 0.12 | 0.35 ± 0.11 | 1.08 ± 0.17 | 7.31E-05 |
rs42250803 | 17 | A*/G | SLC7A11 | Solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 | 0.06 ± 0.06 | −0.06 ± 0.05 | 0.02 ± 0.04 | −0.31 ± 0.06 | 2.23E-05 |