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Table 6 Additive 1 and dominance estimates of SNPs within genes that have general association 2 with feed efficiency

From: Single nucleotide polymorphisms and haplotypes associated with feed efficiency in beef cattle

Indicator SNP BTA Allele Gene symbol Gene name Additive3 Dominance3 P-Value
RFI rs109500421 8 C/T* CNTFR Ciliary neurotrophic factor receptor −0.01 ± 0.05 0.24 ± 0.06 4.54E-05
  rs108942504 22 A/G* TMEM40 Transmembrane protein 40 0.36 ± 0.10 −0.09 ± 0.11 9.04E-06
RADG rs108964818 15 C/T* KDELC2 KDEL (Lys-Asp-Glu-Leu) containing 1-like 0.35 ± 0.06 0.34 ± 0.06 3.44E-08
  rs41620774 15 A/C* ELMOD1 ELMO/CED-12 domain containing 1 0.12 ± 0.03 0.13 ± 0.03 5.58E-05
  rs42342964 23 G*/T PAK1IP1 PAK1 interacting protein 1 0.01 ± 0.01 0.05 ± 0.01 9.16E-06
RIG rs108964818 15 C/T* KDELC2 KDEL (Lys-Asp-Glu-Leu) containing 1-like 2.96 ± 0.56 2.83 ± 0.57 7.43E-07
EI rs109500421 8 C/T* CNTFR Ciliary neurotrophic factor receptor −0.02 ± 0.05 0.23 ± 0.06 5.03E-05
  rs109709275 15 A/G* GRAMD1B GRAM domain containing 1B 0.05 ± 0.05 −0.18 ± 0.05 6.29E-05
  rs108942504 22 A/G* TMEM40 Transmembrane protein 40 0.32 ± 0.10 −0.05 ± 0.11 2.29E-05
EG rs110340232 1 G*/T RAB6B RAB6B, member RAS oncogene family 0.01 ± 0.01 0.04 ± 0.01 5.07E-05
  rs110787048 4 A*/G DPP6 Dipeptidyl-peptidase 6 −0.03 ± 0.01 −0.04 ± 0.01 9.32E-05
  rs110051312 8 A*/C PTPN3 Protein tyrosine phosphatase, non-receptor type 3 0.04 ± 0.03 0.09 ± 0.03 5.46E-05
  rs110196238 8 C*/T PTPN3 Protein tyrosine phosphatase, non-receptor type 3 0.04 ± 0.03 0.09 ± 0.03 5.09E-05
  rs41611457 12 A/G* ENOX1 Ecto-NOX disulfide-thiol exchanger 1 −0.04 ± 0.01 0.03 ± 0.01 6.70E-05
  rs108964818 15 C/T* KDELC2 KDEL (Lys-Asp-Glu-Leu) containing 1-like 0.37 ± 0.07 0.37 ± 0.07 4.42E-07
  rs41620774 15 A/C* ELMOD1 ELMO/CED-12 domain containing 1 0.12 ± 0.03 0.15 ± 0.03 2.94E-05
  rs109889052 19 C/T* PIK3R6 Phosphoinositide-3-kinase, regulatory subunit 6 −0.27 ± 0.07 0.29 ± 0.07 7.79E-05
  1. 1Additive estimate relative to the minor allele.
  2. 2P-value < 0.0001;
  3. 3Estimate ± standard error;
  4. *Minor allele.