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Table 4 Correlation between genomic and pedigree-based kinship

From: Improved estimation of inbreeding and kinship in pigs using optimized SNP panels

 

Pedigree1

All markers

Father-offspring

  

All markers2

0.36

 

LE markers3

0.42

0.83

Full sibs

  

All markers

0.29

 

LE markers

0.34

0.90

Half sibs

  

All markers

0.14

 

LE markers

0.15

0.92

Population

  

All markers

0.78

 

LE markers

0.85

0.97

  1. Correlations estimated within the father-offspring (n = 645), full-sib (n = 502) and half-sib (n = 5,756) pairs and the whole population (n = 446,040).
  2. 1Analysis performed using information from 6–10 generations recorded on paper pedigree; 2Analysis performed using all markers (n = 28,740); 3Analysis performed using only markers in linkage equilibrium (LE) in L1 (9,579 LE markers).
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BMC Genomic Data

ISSN: 2730-6844

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