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Table 2 Correlation between genomic and pedigree-based inbreeding for the three lines (L1, L2 and L3)

From: Improved estimation of inbreeding and kinship in pigs using optimized SNP panels

L1   All markers
  Pedigree 1  
All markers2 0.30  
LE markers3 0.42 0.84
L2   
All markers 0.27  
LE markers 0.28 0.89
L3   
All markers 0.27  
LE markers 0.35 0.92
  1. 1Analysis performed using information from 6–10 generations recorded on paper pedigree; 2Analysis performed using all markers (n = 28,740); 3Analysis performed using only markers in linkage equilibrium (LE) within each line (9579, 7984 and 10235 LE markers for L1, L2 and L3, respectively). L1, L2 and L3 were composed of 945, 313 and 218 animals, respectively.