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Table 1 Summary statistics of genomic and pedigree-based inbreeding estimation

From: Improved estimation of inbreeding and kinship in pigs using optimized SNP panels

  L1 L2 L3
Pedigree 1    
Mean ± SD 0.03 ± 0.02 0.04 ± 0.02 0.04 ± 0.04
Minimum 0.00 0.00 0.00
Maximum 0.15 0.27 0.29
All markers 2    
Mean ± SD −0.01 ± 0.05 0.09 ± 0.07 0.06 ± 0.06
Minimum −0.16 −0.13 −0.12
Maximum 0.23 0.29 0.29
LE markers 3    
Mean ± SD −0.01 ± 0.04 0.12 ± 0.07 0.06 ± 0.05
Minimum −0.19 −0.14 −0.13
Maximum 0.25 0.32 0.30
  1. Mean, standard deviation (SD), minimum and maximum values of genomic and pedigree-based inbreeding estimated within the three lines evaluated (L1, L2 and L3).
  2. 1Analysis performed using information from 6–10 generations recorded on paper pedigree; 2Analysis performed using all markers (n = 28,740); 3Analysis performed using only markers in linkage equilibrium (LE) within each line (9579, 7984 and 10235 LE markers for L1, L2 and L3, respectively). L1, L2 and L3 were composed of 945, 313 and 218 animals, respectively.