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Table 2 Selected genes in Acropora millepora, SNP codon position, and their putative role in the stress response

From: Genotype – environment correlations in corals from the Great Barrier Reef

Gene

SNP name*

SNP codon pos

Putative role in stress response

Argenine kinase

50281_AG_478

1

Detoxification of hyper-oxide

β-gamma crystallin

35180_TG_523

2

Immunity response

Coatomer

60613_TG_230

2

Intra cellular protein transport

Complete component C3

26792_AG_293

1

Immunity response

Galaxin

20421_TC_239

1

Calcification and growth

Hsp60

52394_AG_280

2

Generic heat shock protein

Mn Superoxide dismutase

16774_AC_791

1

Defense against ROS

Thioredoxin

16728_TC_211

1

Defense against ROS

Ubiquitin like protein

12368_TC_731

2

Defense against ROS

Ligand of numb X2

63538_CG_709

1

Possible ligase to bind ubiquitin

  1. *contig numbers from Meyer et al. 2009a.
  2. SNP name constructed in the following manner: (Contig number_SNP nucleotides_position of SNP in trimmed contig).