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Table 5 Number of significant SNPs and their mean effect at various significance levels

From: Genome-wide association analyses for carcass quality in crossbred beef cattle

  FDR* FDR < 0.1 P < 0.001 P < 0.01 P < 0.05
BF 0 0 52 (2.53) 410 (1.75) 1986 (1.16)
BIF 0 0 54 (3.19) 433 (2.17) 1971 (1.44)
HCW 7 (4.90) 8 (4.80) 56 (3.06) 451 (1.85) 2084 (1.22)
REA 0 0 45 (2.63) 446 (1.78) 2060 (1.19)
MRB 0 0 34 (2.68) 391 (1.73) 1752 (1.16)
LM7D 0 0 55 (3.03) 421 (1.98) 2004 (1.30)
BDFR 0 0 52 (2.60) 392 (1.80) 1898 (1.19)
BNR 0 0 53 (2.68) 417 (1.83) 1955 (1.21)
INFR 0 0 59 (2.54) 462 (1.72) 2157 (1.14)
LNR 0 0 27 (2.63) 392 (1.69) 1864 (1.15)
SQFR 0 0 47 (2.39) 408 (1.66) 1786 (1.12)
TLFR 0 0 45 (2.51) 426 (1.67) 1988 (1.12)
  1. * Calculated FDR threshold; Values in the parentheses are average size of SNP effect as proportion of phenotypic variance.