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Table 5 Number of significant SNPs and their mean effect at various significance levels

From: Genome-wide association analyses for carcass quality in crossbred beef cattle

 

FDR*

FDR < 0.1

P < 0.001

P < 0.01

P < 0.05

BF

0

0

52 (2.53)

410 (1.75)

1986 (1.16)

BIF

0

0

54 (3.19)

433 (2.17)

1971 (1.44)

HCW

7 (4.90)

8 (4.80)

56 (3.06)

451 (1.85)

2084 (1.22)

REA

0

0

45 (2.63)

446 (1.78)

2060 (1.19)

MRB

0

0

34 (2.68)

391 (1.73)

1752 (1.16)

LM7D

0

0

55 (3.03)

421 (1.98)

2004 (1.30)

BDFR

0

0

52 (2.60)

392 (1.80)

1898 (1.19)

BNR

0

0

53 (2.68)

417 (1.83)

1955 (1.21)

INFR

0

0

59 (2.54)

462 (1.72)

2157 (1.14)

LNR

0

0

27 (2.63)

392 (1.69)

1864 (1.15)

SQFR

0

0

47 (2.39)

408 (1.66)

1786 (1.12)

TLFR

0

0

45 (2.51)

426 (1.67)

1988 (1.12)

  1. * Calculated FDR threshold; Values in the parentheses are average size of SNP effect as proportion of phenotypic variance.