Table 6 SNP type and distributions along with SNP comparisons of sequences found within and between species (homologous sequence comparisons) using SNP_Finder_Plus (8X min. coverage, 30% min. minor allele, 90% min. identity)
Species assembly | SNP | Average coverage | SNPs/assembly length1 | SNP distribution | |||||
|---|---|---|---|---|---|---|---|---|---|
A↔C | A↔G | A↔T | C↔G | C↔T | G↔T | ||||
P. cyananthus | 2,493 | 16.4 | 0.000539 (~1/1855Â bp) | 10.7% | 29.5% | 13.9% | 4.3% | 30.2% | 9.5% |
P. dissectus | 737 | 14.3 | 0.000280 (1/3568Â bp) | 9.8% | 30.7% | 15.6% | 4.6% | 27.4% | 9.8% |
P. davidsonii | 713 | 14.4 | 0.000300 (~1/3333Â bp) | 11.9% | 26.4% | 15.2% | 3.9% | 28.3% | 11.8% |
P. fruticosus | 615 | 12.4 | 0.000265 (~1/3777Â bp) | 11.7% | 27.2% | 17.9% | 4.2% | 25.4% | 12.0% |
Homologous sequence comparisons | |||||||||
P. cyananthus × P. dissectus | 3,253 | 10.6 | 0.009610 (~1/104 bp) | 11.7% | 27.5% | 16.0% | 7.1% | 27.1% | 10.6% |
P. cyananthus × P. davidsonii | 1,958 | 10.7 | 0.008062 (~1/124 bp) | 11.1% | 27.6% | 15.8% | 7.1% | 28.5% | 9.9% |
P. cyananthus × P. fruticosus | 2,015 | 10.6 | 0.008367 (~1/119 bp) | 10.6% | 27.2% | 16.7% | 6.8% | 28.7% | 10.1% |
P. dissectus × P. davidsonii | 2,348 | 10.8 | 0.015605 (~1/64 bp) | 12.6% | 26.7% | 15.5% | 7.5% | 27.3% | 10.4% |
P. dissectus × P. fruticosus | 2,133 | 10.0 | 0.011991 (~1/83 bp) | 12.0% | 26.4% | 16.5% | 7.6% | 27.2% | 10.4% |
P. davidsonii × P. fruticosus | 2,156 | 10.1 | 0.008404 (~1/119 bp) | 12.8% | 28.2% | 14.5% | 7.2% | 27.2% | 10.1% |