Table 5 Data obtained from MISA (SSR), Blast2GO (GO) and RepeatMasker (RM)
Penstemonspecies | ||||||
|---|---|---|---|---|---|---|
P. cyananthus | P. dissectus | P. davidsonii | P. fruticosus | |||
SSR | Total SSRs1 | 97 | 113 | 49 | 58 | |
SSRs/Assembly Length | 2.1E-05 (~1/48000) | 4.3E-05 (~1/23000) | 2.1E-05 (~1/48000) | 2.5E-05 (~1/40000) | ||
Repeat Type | di- | 44.3% | 40.7% | 46.9% | 48.3% | |
tri- | 45.4% | 43.4% | 44.9% | 41.4% | ||
tetra- | 10.3% | 15.9% | 8.2% | 10.3% | ||
GO | Contigs Analyzed | 9,714 | 5,364 | 4,882 | 4,777 | |
Blast Hits Found2 | 1,899 | 1,125 | 1,121 | 1,091 | ||
Annotated Hits | 1,430 | 844 | 388 | 826 | ||
% Blast Hits | 19.5% | 21.0% | 23.0% | 22.8% | ||
% Annotated | 14.7% | 15.7% | 7.9% | 17.3% | ||
RM | Masked Repeat Elements | 28.5% | 16.8% | 17.4% | 16.1% | |
Retroelements (LTR) | 7.8% | 3.0% | 4.9% | 4.6% | ||
DNA Transposons | 0.3% | 0.9% | 1.0% | 1.0% | ||
Other Repeats3 | 20.4% | 12.9% | 11.6% | 10.5% | ||