Table 1 COS markers with multiple hits in DM superscaffolds and their corresponding DM gene hits
From: Linking the potato genome to the conserved ortholog set (COS) markers
COS | Genetic map chromosome | DM gene | Best evalue | DM chromosome | DM gene annotation |
|---|---|---|---|---|---|
T0408 | 11 | PGSC0003DMG400029022 | 0E | 11 | Aminotransferase |
PGSC0003DMG400046906 | 0E | 1 | Gene of unknown function | ||
At5g27620 | 1, 4 | PGSC0003DMG400024698 | 9E-39 | 1 | CAK associated cycling H homolog |
PGSC0003DMG400009473 | 1E-155 | 4 | |||
At3g63200 | 9 | PGSC0003DMG400012878 | 0E | 9 | Patatin T5 |
PGSC0003DMG400020128 | 0E | 6 | |||
At2g41680 | 9 | PGSC0003DMG402027256 | 0E | 4 | Thioredoxin reductase |
| Â | Â | PGSC0003DMG400023691 | 0E | 10 | Â |
At1g29260 | na | PGSC0003DMG400008719 | 0E | 3 | Peroxisomal targeting signal type 2 receptor |
| Â | Â | PGSC0003DMG400009000 | 0E | 1 | Â |
At1g10580 | 2 | PGSC0003DMG402030529 | 0E | 5 | Conserved gene of unknown function |
PGSC0003DMG400022364 | 0E | 2 | |||
At1g08550 | na | PGSC0003DMG400020993 | 9E-59 | 4 | Violaxanthin epoxidase |
PGSC0003DMG400010690 | 5E-51 | 4 | |||
PGSC0003DMG400010688 | 3E-71 | 4 | |||
At1g14980 | 5 | PGSC0003DMG402023448 | 1E-99 | 5 | small molecular heat shock protein |
PGSC0003DMG400028744 | 1E-110 | 7 | CPM10 protein | ||
At2g42620 | 12 | PGSC0003DMG400007856 | 0E | 12 | F-box family protein |
PGSC0003DMG400035320 | 1E-112 | 7 | F-box/leucine rich repeat protein | ||
At2g46370 | 10 | PGSC0003DMG401000095 | 0E | 1 | Jasmonic acid amino acid conjugating enzyme |
PGSC0003DMG400033879 | 3E-92 | 5 | |||
At3g19895 | 4 | PGSC0003DMG400032542 | 0E | 4 | Conserved gene of unknown function |
PGSC0003DMG400019001 | 1E-105 | 11 | |||
At4g11820 | 8 | PGSC0003DMG400004253 | 1E-124 | 12 | HMG CoA synthase |
| Â | Â | PGSC0003DMG400022749 | 1E-74 | 8 | Â |
| Â | Â | PGSC0003DMG400022750 | 1E-110 | 8 | Â |
At4g24620 | 4 | PGSC0003DMG400030128 | 9E-72 | 1 | Glucose 6 phosphate isomerase |
| Â | Â | PGSC0003DMG400012910 | 1E-107 | 4 | Â |
| Â | Â | PGSC0003DMG400009848 | 1E-77 | na | Â |
At5g20890 | 11 | PGSC0003DMG400019637 | 0E | 11 | chaperonin containing T-complex protein 1, beta subunit |
PGSC0003DMG400007161 | 9E-54 | 6 | T-complex protein 1 subunit beta | ||
PGSC0003DMG400012727 | 0E | 4 | |||
T0805 | 6 | PGSC0003DMG400020484 | 1E-158 | 6 | ATP synthase subunit b’ chloroplastic |
| Â | Â | PGSC0003DMG400020466 | 1E-158 | 6 | Â |
T0989 | 7, 12 | PGSC0003DMG402013561 | 0E | 7 | Pyruvate dehydrogenase E1 alpha subunit |
| Â | Â | PGSC0003DMG400002921 | 1E-167 | 12 | Â |
T1511 | 3 | PGSC0003DMG400018190 | 1E-160 | 3 | Elongation factor TuA |
PGSC0003DMG400041767 | 1E-63 | 6 | Elongation factor TuB |