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Table 8 SNPs associated with fat yield a

From: Discovery of single nucleotide polymorphisms in candidate genes associated with fertility and production traits in Holstein cattle

SNP

Gene

Least-squares means (SEM)

Linear

Dominance

  

0

1

2

Effect

Pvalue

Q value

Pvalue

Q value

rs41766835

APBB1

−0.06 (7.57)

6.22 (3.16)

12.64 (2.20)

6.39

0.0259

0.1474

0.9883

0.9719

rs110541595

ARL6IP1

3.52 (4.03)

5.83 (2.53)

12.47 (2.80)

4.88

0.0341

0.1516

0.5205

0.9719

rs43114141

AVP

3.31 (3.56)

6.03 (2.82)

12.53 (2.97)

4.76

0.0291

0.1474

0.5786

0.9719

rs133674837

BDH2

7.70 (4.15)

3.71 (2.57)

13.03 (2.74)

4.18

0.643

0.2443

0.0431

0.5703

rs137601357

CAST

18.50 (3.70)

8.56 (2.48)

4.87 (2.89)

−6.38

0.0033

0.0587

0.3021

0.9719

rs109621328

CD14

−15.29 (14.91)

−0.36 (4.49)

10.42 (1.94)

11.34

0.0055

0.0733

0.8097

0.9719

rs41711496

CD40

3.72 (3.20)

7.94 (2.48)

12.40 (3.17)

4.34

0.0479

0.1965

0.9705

0.9719

rs134432442

CPSF1

37.64 (6.52)

19.88 (2.79)

−0.39 (2.19)

−19.67

<0.0001

0.0048

0.7696

0.9719

rs133449166

CSNK1E

15.18 (3.92)

9.75 (2.57)

4.72 (2.85)

−5.19

0.0216

0.1474

0.9518

0.9719

rs110629231

DNAH11

−1.91 (4.66)

7.78 (2.61)

10.96 (2.55)

5.40

0.0197

0.1474

0.3446

0.9719

rs133175991

DZIP3

−2.51 (8.81)

5.65 (3.21)

11.90 (2.36)

6.61

0.0290

0.1474

0.8583

0.9719

FGF2ag

FGF2

1.05 (4.24)

7.56 (2.58)

11.43 (2.61)

4.87

0.0304

0.1474

0.6946

0.9719

rs109247499

FST

11.59 (3.27)

10.96 (2.50)

1.75 (3.25)

−4.94

0.0265

0.1474

0.1831

0.8095

rs43703916

MRPL48

0.50 (3.43)

12.51 (2.48)

6.04 (3.33)

2.59

0.2581

0.3471

0.0042

0.3149

rs111027720

PARM1

5.09 (3.45)

4.84 (2.48)

18.09 (2.97)

7.01

0.0014

0.0373

0.0330

0.5651

rs136457441

RPL26

15.50 (3.55)

6.36 (2.43)

13.19 (3.35)

−0.84

0.7208

0.5003

0.0136

0.3149

rs43321188

SERPINE2

−5.08 (5.73)

11.63 (2.75)

8.10 (2.27)

2.24

0.3735

0.3831

0.0118

0.3149

rs110365063

SLC18A2

−4.30 (5.73)

14.21 (2.75)

7.25 (2.27)

2.98

0.3407

0.3634

0.0366

0.5651

rs134031231

TXN2

3.94 (3.80)

13.18 (2.38)

5.89 (2.90)

−0.21

0.9263

0.5256

0.0119

0.3149

  1. aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP. For entries not beginning with rs, the abbreviation given by previous researchers was used.
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