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Table 5 SNPs associated with productive life a

From: Discovery of single nucleotide polymorphisms in candidate genes associated with fertility and production traits in Holstein cattle

SNP

Gene

Least-squares means (SEM)

Linear

Dominance

  

0

1

2

Effect

Pvalue

Q value

Pvalue

Q value

rs109967779

ACAT2

2.05 (0.65)

1.24 (0.41)

−0.18 (0.42)

−1.18

0.0006

0.0014

0.5495

0.9408

rs133700190

AP3B1

3.74 (1.11)

1.16 (0.47)

0.15 (0.36)

−1.42

0.0006

0.0014

0.2684

0.9053

rs110541595

ARL6IP1

0.22 (0.63)

1.49 (0.41)

−0.12 (0.45)

−0.45

0.2040

0.1193

0.0051

0.4845

rs110127056

ASL

1.49 (0.55)

0.90 (0.40)

−0.11 (0.47)

−0.82

0.0159

0.0204

0.6685

0.9798

rs43114141

AVP

0.23 (0.56)

1.24 (0.45)

0.15 (0.47)

−0.12

0.7144

0.2797

0.0446

0.8474

rs109447102

CCDC86

−0.42 (1.21)

−0.16 (0.49)

1.17 (0.35)

1.18

0.0074

0.0112

0.6685

0.9798

rs41711496

CD40

−0.50 (0.50)

0.71 (0.40)

2.28 (0.50)

1.39

<0.0001

0.0004

0.4864

0.9408

rs41857027

CFDP2

−0.69 (0.90)

0.87 (0.64)

1.27 (0.36)

0.81

0.0482

0.0489

0.4461

0.9408

rs109301586

COQ9

−0.67 (0.50)

0.71 (0.44)

2.34 (0.48)

1.50

<0.0001

0.0004

0.8009

0.9798

rs109443582

CSPP1

3.16 (3.99)

−1.02 (0.72)

1.08 (0.34)

1.74

0.0147

0.0204

0.0124

0.5059

rs110270752

DEPDC7

−3.30 (1.02)

0.48 (0.48)

1.09 (0.36)

1.41

0.0005

0.0014

0.0202

0.5059

rs109503725

DSC2

0.28 (0.51)

0.35 (0.40)

1.61 (0.50)

0.67

0.0445

0.0478

0.2216

0.9053

rs43745234

FSHR

−1.14 (0.82)

0.36 (0.40)

1.34 (0.39)

1.13

0.0023

0.0045

0.6438

0.9708

rs41893756

FUT1

−0.86 (1.04)

−0.96 (0.49)

1.60 (0.35)

1.88

<0.0001

0.0004

0.0546

0.8487

rs109516714

GPLD1

−0.34 (0.63)

0.55 (0.41)

1.17 (0.45)

0.73

0.0351

0.0403

0.7998

0.9798

rs109711583

HSD17B12

2.01 (0.57)

0.80 (0.39)

−0.08 (0.47)

−1.03

0.0030

0.0053

0.7318

0.9798

rs109769865

HSD17B6

0.25 (1.42)

−0.80 (0.56)

1.16 (0.34)

1.35

0.0054

0.0090

0.0915

0.8487

rs110828053

HSD17B7

2.01 (1.18)

1.24 (0.47)

0.34 (0.35)

−0.87

0.0397

0.0441

0.9303

0.9830

HSP70C895D

HSPA1A

1.39 (0.84)

1.27 (0.43)

0.07 (0.38)

−0.90

0.0155

0.0204

0.3526

0.9053

rs110789098

IBSP

0.65 (0.56)

1.36 (0.42)

−0.25 (0.47)

−0.58

0.0888

0.0664

0.0213

0.5059

rs111015912

LDB3

3.01 (1.10)

1.87 (0.44)

−0.12 (0.36)

−1.81

<0.0001

0.0004

0.5322

0.9408

rs41256848

LHCGR

1.97 (0.60)

0.71 (0.38)

0.03 (0.46)

−0.94

0.0061

0.0097

0.5546

0.9408

rs134011564

MARVELD1

2.34 (3.77)

0.81 (0.36)

−0.87 (0.71)

−1.67

0.0188

0.0232

0.9690

0.9830

rs41859871

MON1B

5.54 (2.25)

1.72 (0.55)

0.31 (0.33)

−1.65

0.0018

0.0040

0.3340

0.9053

rs109761676

MS4A8B

−1.96 (0.96)

0.33 (0.43)

1.46 (0.39)

1.43

0.0004

0.0014

0.3471

0.9053

rs133762601

NEU3

−0.81 (0.66)

−1.29 (1.02)

0.98 (0.34)

0.99

0.0030

0.0053

0.1963

0.9053

rs134264563

OCLN

1.84 (0.88)

1.03 (0.41)

0.01 (0.38)

−0.96

0.0113

0.0164

0.8560

0.9798

rs111027720

PARM1

3.06 (0.54)

0.77 (0.39)

−1.03 (0.46)

−2.03

<0.0001

0.0004

0.6161

0.9708

rs109813896

PCCB

2.00 (0.68)

1.05 (0.41)

0.07 (0.41)

−1.06

0.0023

0.0045

0.9700

0.9830

rs109629628

PMM2

3.26 (0.66)

0.94 (0.39)

−0.48 (0.43)

−1.76

<0.0001

0.0004

0.3833

0.9408

rs133729105

RABEP2

−0.86 (0.62)

0.25 (0.40)

1.68 (0.42)

1.30

<0.0001

0.0004

0.7495

0.9798

rs42158454

SYTL2

N/A N/A

1.88 (0.63)

0.42 (0.33)

−1.46

0.0261

0.0311

N/A

N/A

rs110660625

TBC1D24

2.12 (0.70)

1.00 (0.41)

−0.11 (0.39)

−1.17

0.0006

0.0014

0.9830

0.9830

rs110805802

TDRKH

−4.35 (1.72)

−0.47 (0.55)

1.20 (0.33)

2.00

<0.0001

0.0004

0.2737

0.9053

rs134282928

WBP1

2.73 (3.26)

−0.26 (0.53)

1.01 (0.35)

1.07

0.0484

0.0489

0.2112

0.9053

rs110883602

ZP2

−1.06 (0.64)

1.05 (0.48)

1.67 (0.47)

1.25

0.0005

0.0014

0.1876

0.9053

  1. aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP. For entries not beginning with rs, the abbreviation given by previous researchers was used.