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Table 3 SNPs associated with heifer conception rate a

From: Discovery of single nucleotide polymorphisms in candidate genes associated with fertility and production traits in Holstein cattle

SNP

Gene

Least-squares means (SEM)

Linear

Dominance

  

0

1

2

Effect

Pvalue

Q value

Pvalue

Q value

rs133700190

AP3B1

3.74 (1.59)

2.72 (0.63)

1.24 (0.46)

−1.38

0.0204

0.1290

0.8236

0.9592

rs41766835

APBB1

2.37 (1.40)

2.49 (0.61)

1.13 (0.44)

−1.02

0.0288

0.1410

0.4152

0.9592

rs110541595

ARL6IP1

1.28 (0.87)

3.36 (0.53)

0.50 (0.59)

−0.85

0.0977

0.2380

0.0010

0.0713

rs135390325

C1QB

2.37 (1.40)

2.49 (0.61)

1.13 (0.44)

1.87

0.0224

0.1290

0.7779

0.9592

rs135744058

CACNA1D

2.00 (1.30)

3.42 (0.56)

0.95 (0.49)

−1.51

0.0041

0.0519

0.0229

0.5439

rs109621328

CD14

12.97 (3.16)

2.34 (0.95)

1.65 (0.41)

−2.05

0.0192

0.1290

0.0068

0.2153

rs134432442

CPSF1

−0.61 (1.44)

1.18 (0.61)

2.35 (0.48)

1.31

0.0212

0.1290

0.7404

0.9592

rs133449166

CSNK1E

2.82 (0.82)

2.15 (0.53)

0.86 (0.59)

−1.03

0.0321

0.1410

0.6649

0.9592

rs110270752

DEPDC7

−1.71 (1.44)

0.64 (0.65)

2.66 (0.47)

2.10

0.0003

0.0095

0.8625

0.9592

rs109503725

DSC2

0.88 (0.67)

1.76 (0.51)

2.79 (0.66)

0.95

0.0386

0.1438

0.9054

0.9592

rs133175991

DZIP3

6.52 (1.77)

1.76 (0.63)

1.44 (0.45)

−1.18

0.0556

0.1677

0.0435

0.6897

rs43745234

FSHR

−0.38 (1.14)

1.52 (0.53)

2.53 (0.51)

1.27

0.0149

0.1290

0.5717

0.9592

rs109262355

FYB

1.17 (0.87)

0.94 (0.53)

2.77 (0.55)

1.04

0.0302

0.1410

01484

0.7832

rs42339105

GOLGA4

−17.26 (5.65)

1.73 (0.87)

1.78 (0.40)

0.95

0.3028

0.3760

0.0015

0.0713

rs109516714

GPLD1

0.42 (0.85)

1.63 (0.53)

2.52 (0.59)

1.02

0.0369

0.1438

0.8243

0.9592

rs110828053

HSD17B7

1.74 (1.64)

3.15 (0.62)

1.17 (0.44)

−1.27

0.0334

0.1410

0.1038

0.6897

rs111015912

LDB3

4.41 (1.57)

2.72 (0.59)

1.16 (0.46)

−1.59

0.0067

0.0707

0.9491

0.9592

rs109761676

MS4A8B

−0.58 (1.29)

0.94 (0.55)

2.95 (0.50)

1.88

0.0006

0.0127

0.7764

0.9592

rs133497176

NFKBIL1

−1.09 (2.07)

0.82 (0.74)

2.04 (0.42)

1.35

0.0474

0.1580

0.7885

0.9592

rs111027720

PARM1

3.78 (0.72)

2.19 (0.52)

−0.28 (0.62)

−2.06

<0.0001

0.0057

0.5129

0.9592

rs110805802

TDRKH

−6.06 (2.48)

0.90 (0.77)

2.53 (0.44)

2.42

0.0010

0.0158

0.0673

0.6897

rs110883602

ZP2

0.48 (0.81)

1.76 (0.61)

2.45 (0.59)

0.94

0.0433

0.1524

0.6904

0.9592

  1. aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP.
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BMC Genomic Data

ISSN: 2730-6844

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