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Table 11 SNPs associated with protein percent a

From: Discovery of single nucleotide polymorphisms in candidate genes associated with fertility and production traits in Holstein cattle

SNP

Gene

Least-squares means (SEM)

Linear

Dominance

  

0

1

2

Effect

Pvalue

Q value

Pvalue

Q value

rs109967779

ACAT2

0.018 (0.006)

0.016 (0.004)

0.006 (0.004)

−0.007

0.0495

0.1650

0.3982

0.3071

rs110217852

BSP3

−0.005 (0.008)

0.009 (0.004)

0.020 (0.003)

0.022

0.0012

0.0222

0.7556

0.3129

rs109332658

C7H19orf60

0.005 (0.009)

0.009 (0.004)

0.018 (0.003)

0.008

0.0442

0.1628

0.6785

0.3129

rs135744058

CACNA1D

0.012 (0.010)

0.020 (0.004)

0.007 (0.003)

−0.008

0.0411

0.1628

0.0915

0.3040

rs109447102

CCDC86

0.005 (0.012)

0.006 (0.005)

0.017 (0.003)

0.009

0.0322

0.1507

0.5579

0.3129

rs134432442

CPSF1

0.048 (0.010)

0.027 (0.004)

0.001 (0.003)

−0.025

<0.0001

0.0063

0.7109

0.3129

rs110270752

DEPDC7

−0.013 (0.010)

0.012 (0.004)

0.015 (0.003)

0.009

0.0323

0.1507

0.1169

0.3040

rs109561866

DYRK3

−0.014 (0.023)

0.002 (0.005)

0.016 (0.003)

0.013

0.0143

0.1001

0.9134

0.3215

rs133175991

DZIP3

0.040 (0.013)

0.018 (0.005)

0.010 (0.003)

−0.011

0.0201

0.1109

0.4166

0.3071

rs135071345

FAM5C

0.007 (0.016)

−0.002 (0.005)

0.018 (0.003)

0.016

0.0006

0.0210

0.1168

0.3040

rs109137982

FCER1G

−0.001 (0.033)

−0.002 (0.006)

0.016 (0.003)

0.016

0.0056

0.0490

0.6054

0.3129

rs109247499

FST

0.022 (0.005)

0.011 (0.004)

0.006 (0.005)

−0.008

0.0163

0.1037

0.4741

0.3129

rs41893756

FUT1

−0.010 (0.010)

0.007 (0.005)

0.017 (0.003)

0.012

0.0046

0.0460

0.6355

0.3129

rs109262355

FYB

0.009 (0.006)

0.007 (0.004)

0.020 (0.004)

0.007

0.0423

0.1628

0.1740

0.3040

rs43079452

HSD17B3

−0.008 (0.017)

0.021 (0.005)

0.011 (0.003)

−0.005

0.2902

0.4731

0.0488

0.3040

HSP70C895D

HSPA1A

0.019 (0.008)

0.023 (0.004)

0.005 (0.003)

−0.012

0.0016

0.0222

0.0534

0.3040

rs109761676

MS4A8B

0.001 (0.009)

0.005 (0.004)

0.021 (0.004)

0.013

0.0014

0.0222

0.3892

0.3071

rs111027720

PARM1

0.023 (0.005)

0.013 (0.003)

0.002 (0.004)

−0.010

0.0019

0.0222

0.8492

0.3129

rs109629628

PMM2

0.029 (0.007)

0.011 (0.004)

0.009 (0.004)

−0.008

0.0206

0.1109

0.1396

0.3040

rs43572154

ROR2

0.000 (0.018)

0.005 (0.005)

0.016 (0.003)

0.010

0.0481

0.1650

0.8169

0.3129

rs41912290

SREBF1

0.019 (0.006)

0.015 (0.004)

0.006 (0.004)

−0.007

0.0378

0.1628

0.6750

0.3129

rs110805802

TDRKH

−0.001 (0.017)

0.001 (0.005)

0.017 (0.003)

0.014

0.0064

0.0498

0.5183

0.3129

  1. aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP. For entries not beginning with rs, the abbreviation given by previous researchers was used.
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BMC Genomic Data

ISSN: 2730-6844

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