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Figure 3 | BMC Genetics

Figure 3

From: iXora: exact haplotype inferencing and trait association

Figure 3

Expected haplotype distributions visualization. Expected haplotype frequencies ĉ k 1 k 2 are shown for the simulated use case detailed in Additional file 1, for the two phenotypic groups: A) tall progeny, B) short progeny. The variance Δ k 1 k 2 due to uncertainty in crossover locations is shown as shaded regions. Clear distortion is visible near marker 30 (marked by the dashed rectangle), evident from under-representation of haplotype combinations involving paternal haplotype H2 in the short progeny (green and yellow lines in B).

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