Variants in the 3' UTR of General Transcription Factor IIF, polypeptide 2 affect female calving efficiency in Japanese Black cattle

Table 1 SNPs with genome-wide significant associations with NCP ₄ on BTA12

BTA	SNP-id	Position (bp)_UMD3.1	Allele in upper extreme	Minor allele frequency in upper extreme	Minor allele frequency in lower extreme	Allele in lower extreme	Odds ratio	P-value
12	ARS-BFGL-NGS-94479	15405850	A	0.3599	0.2523	G	1.667	8.401E-06
12	Hapmap39990-BTA-31570	15441597	A	0.3697	0.2628	C	1.645	9.787E-06
12	Hapmap36290-SCAFFOLD191599_16698	15462779	A	0.3697	0.2628	G	1.645	9.787E-06

SNPs positions are based on the UMD3.1 assembly of the bovine genome.
The upper extremes and lower extremes correspond to NCP₄ values above the 93.3^rd percentile and below the 6.68^th percentile, respectively.

ISSN: 2730-6844