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Table 1 Relative frequencies of recurrent mutations captured by gene genealogy, out of polymorphic loci

From: Detecting negative selection on recurrent mutations using gene genealogy

A. v/μ=0.

     

θ μ

σ=0 (neutral)

σ = − 10

σ = − 103/2

σ = − 102

σ = − 105/2

10-1

0.091

0.141

0.071

0.014

0.000

10-1/2

0.231

0.216

0.190

0.057

0.026

1(=100)

0.470

0.625

0.467

0.238

0.102

10+1/2

NAa

0.856

0.905

0.648

0.300

10+1

NA

NA

0.995

0.981

0.759

B. v/μ=1.

     

θ μ

σ=0(neutral)

σ = − 10

σ = − 103/2

σ = − 102

σ = − 105/2

10-1

0.097

0.080

0.029

0.041

NA

10-1/2

0.306

0.212

0.165

0.082

0.026

1(=100)

0.744

0.668

0.463

0.263

0.104

10+1/2

0.986

0.966

0.898

0.628

0.313

10+1

1.000

1.000

1.000

0.980

0.729

C. v / μ=3.

     

θ μ

σ=0(neutral)

σ = − 10

σ = − 103/2

σ = − 102

σ = − 105/2

10-1

0.170

0.098

0.039

0.027

NA

10-1/2

0.434

0.226

0.159

0.073

0.042

1(=100)

0.797

0.631

0.412

0.215

0.104

10+1/2

0.987

0.963

0.864

0.622

0.338

10+1

0.999

0.999

0.997

0.961

0.713

  1. NOTE. The results are shown for sets with n=100 sampled sequences each. v/μ is the backward/forward ratio of mutation rates. θ μ (≡ 4) is the rescaled forward mutation rate. σ(≡ 4Ns) denotes the rescaled selection coefficient.
  2. a “NA” is assigned to a category with less than 30 polymorphic loci.