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Table 5 QTL associated with agronomic and aerobic root traits of HKR47 × MAS26 population

From: Genetic variation, linkage mapping of QTL and correlation studies for yield, root, and agronomic traits for aerobic adaptation

Trait Name Chr. no. Position (cM) Flanking markers Position of flanking markers (cM) LR LOD Additive effect R2 DPEa
Root length qRL8.2 8 57.8 RM310-RM547 57.0-58.1 13.58 2.9 1.980 19.8 M
qRL9.1 9 34.1 RM524-RM257 13.2-66.1 11.87 2.6 -2.800 31.6 H
Root thickness qRT1.1 1 107.9 RM488-RM237 101.4-112.9 20.43 4.4 0.406 38.4 M
Dry root weight qDRW8.1 8 14.6 RM152-RM310 9.4-57.0 21.26 4.6 -0.439 44.7 H
Plant height qPH8.1 8 101.5 RM256 101.5 16.00 3.5 -4.424 28.2 H
qPH11.1 11 11.9 RM4-RM202 5.0-6.2 16.10 3.5 -5.682 42.6 H
Panicle length qPL12.1 12 47.4 RM28048 47.4 13.40 2.9 1.952 36.8 M
qPL10.1 10 70.8 RM258 70.8 11.78 2.6 1.200 21.6 M
Tiller number qTN8.3 8 123.2 RM3331 123.2 16.60 3.6 -1.730 26.4 H
qTN8.1 8 15.7 RM152-RM310 9.4-57.0 11.90 2.6 -3.124 29.3 H
Panicles plant-1 qNPP8.3 8 123.2 RM3331 123.2 13.82 3.0 -1.340 20.2 H
qNPP8.1 8 16.2 RM152-RM310 9.4-57.0 13.51 2.9 -2.790 31.6 H
Seeds panicle-1 qNSP8.1 8 123.2 RM3331 123.2 11.46 2.5 -186.300 15.3 H
Grain yield qGY2.2 2 118.5 RM475-RM526 92.5-136.3 12.56 2.7 145.100 43.2 M
  1. aDirection of phenotypic effect; H and M indicate HKR47 and MAS26 alleles, respectively. Additive effect is the effect of substituting a MAS26 allele for an HKR47 allele; its positive value indicates that MAS26 has the positive allele; LR: Likelihood ratio, LOD: log10 of an odds ratio, R2: percent phenotypic variance.
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