|
Gene Name
|
Annotated genomic sequences from Dominetteb
|
RNA transcripts representing the expressed gene sequences obtained from other animals
|
|---|
|
WC1-1
|
+
|
+
|
|
WC1-2
|
Db7-Dd’11c
|
-
|
|
WC1-3
|
D1c
|
+
|
|
WC1-4
|
+
|
+
|
|
WC1-5
|
+
|
+
|
|
WC1-6
|
D1-Dd’11c
|
-
|
|
WC1-7
|
+
|
-
|
|
WC1-8
|
Dc8-Dd’11c
|
-
|
|
WC1-9
|
+
|
+
|
|
WC1-10
|
+
|
+
|
|
WC1-11
|
+d
|
+
|
|
WC1-12
|
+
|
-
|
|
WC1-13
|
+
|
+
|
|
WC1-nd1
|
-
|
+d, e
|
|
WC1-nd2
|
-
|
D1 onlye
|
- a. Herzig et al., 2009, BMC Genomics, [3].
- b. Dominette was the reference animal whose DNA was used by The Bovine Genome Sequencing and Analysis Consortium, [26]; D = domain, and they are described by their pattern type (a-d’) as well as presumed position within the molecule (Domain 1 to 11). + = all 11 domains present in assembled genome or corresponding cDNA obtained.
- c. Only partial sequences were obtained due to gaps in the genome sequences.
- d. A transcript corresponding to SRCR Domain 1 through the intracytoplasmic region were obtained but it coded for only six extracellular domains, thus it was smaller than the majority of other WC1 molecules [3, 14].
- e. While transcripts for the SRCR Domain 1 of the proposed genes were found, they were named WC1-nd1 and WC1-nd2 because their placement was “not determined” in the genome of Dominette.
