Table 1 Number of Pi2/9 homologs in the rice, sorghum and Brachypodium genomes
From: Heterogeneous evolutionary rates of Pi2/9homologs in rice
Accession name | Species | Subspecies/Genome type | NBS-LRRs | NBS or LRRfragments | Total | Source of sequences | References |
|---|---|---|---|---|---|---|---|
Nippobare | O. sativa | Japonica/AA | 6 | 1 | 7 | WGSb | [41] |
NK58 | O. sativa | Japonica/AA | 6 | 1 | 7 | WGS | [46] |
75-1-127 | O. sativa | Indica/AA | 8 | 1 | 9 | BAC sequencingc | [18] |
C101A51 | O. sativa | Indica/AA | 8 | 1 | 9 | BAC sequencing | [19] |
93-11 | O. sativa | Indica/AA | 4 | 0 | 4 | WGS | [42] |
PA64 | O. sativa | Indica/AA | 5 | 0 | 5 | WGS | [43] |
GLA4 | O. sativa | Indica/AA | 3 | 2 | 5 | WGS | [46] |
IR24 | O. sativa | Indica/AA | 4 | 1 | 5 | WGS | This study |
SH527 | O. sativa | Indica/AA | 4 | 1 | 5 | WGS | This study |
MH 63 | O. sativa | Indica/AA | 4 | 1 | 5 | WGS | This study |
GQ280269 | O. officinalis | CC | 6 | 0 | 6 | BAC sequencing | [20] |
GQ280268 | O. minuta a | CC | 7 | 3 | 10 | BAC sequencing | [20] |
GQ280267 | O. minuta a | BB | 2 | 0 | 2 | BAC sequencing | [20] |
GQ280266 | O. punctata | BB | 4 | 0 | 4 | BAC sequencing | [20] |
GQ280265 | O. nivara | AA | 2 | 0 | 2 | BAC sequencing | [20] |
IA96717 | O. glaberrimab | AA | 0 | 5 | 5 | BESd | [47] |
IA105491 | O. rufipogon | AA | 0 | 12 | 12 | BES | [47] |
IA105143 | O. alta | CCDD | 0 | 3 | 3 | BES | [47] |
IA100882 | O. australiensis | EE | 0 | 6 | 6 | BES | [47] |
IA101232 | O. brachyantha | EE | 0 | 2 | 2 | BES | [47] |
IA104502 | O. coarctatad | HHKK | 0 | 3 | 3 | BES | [47] |
IA102118 | O. granulata | GG | 0 | 6 | 6 | BES | [47] |
IA100821 | O. ridleyi | HHJJ | 0 | 6 | 6 | BES | [47] |
Q2436 | O. sativa | Indica/AA | 0 | 7 | 7 | PCR | This study |
GM2 | O. sativa | Indica/AA | 0 | 8 | 8 | PCR | This study |
Tetep | O. sativa | Indica/AA | 0 | 6 | 6 | PCR | This study |
Tadukan | O. sativa | Indica/AA | 0 | 7 | 7 | PCR | This study |
Total | Â | Â | 73 | 83 | 156 | Â | Â |
BTx623 | S. bicolor | Â | 5 | 0 | 5 | WGS | [49] |
Bd21 | B.distachyon | Â | 1 | 0 | 1 | WGS | [50] |