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Table 3 Chromosome-wise number of significant SNPs in reference population (REF) and the confirmed SNP in the validation population (VAL)

From: Analyzes of genome-wide association follow-up study for calving traits in dairy cattle

chromosome 1Unique significant SNPs in REF dataset 2Confirmed in VAL dataset 3Number of confirmed SNPs within boundary of QTL in COMB dataset
1 22 15 7
2 3 2 -
3 41 31 6
4 20 8 3
5 7 5 2
6 52 22 5
7 8 5 1
8 8 5 2
9 27 19 9
10 19 10 4
11 8 5 2
12 12 6 4
13 34 17 10
14 4 2 -
15 25 15 2
16 9 6 -
17 6 4 -
18 99 36 19
19 62 39 15
20 27 9 5
21 5 1 -
22 1 1 -
23 39 20 4
24 3 1 -
25 60 28 9
26 11 6 3
28 11 2 -
29 3 - -
  1. 1Number of unique SNPs in the REF dataset those were significant chromosome wide level.
  2. 2Confirmed in the VAL dataset at P < 0.05.
  3. 3Any of the confirmed SNPs that fell in the boundaries of QTL defined for the COMB dataset of any trait presented in Table 4.