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Table 3 Chromosome-wise number of significant SNPs in reference population (REF) and the confirmed SNP in the validation population (VAL)

From: Analyzes of genome-wide association follow-up study for calving traits in dairy cattle

chromosome

1Unique significant SNPs in REF dataset

2Confirmed in VAL dataset

3Number of confirmed SNPs within boundary of QTL in COMB dataset

1

22

15

7

2

3

2

-

3

41

31

6

4

20

8

3

5

7

5

2

6

52

22

5

7

8

5

1

8

8

5

2

9

27

19

9

10

19

10

4

11

8

5

2

12

12

6

4

13

34

17

10

14

4

2

-

15

25

15

2

16

9

6

-

17

6

4

-

18

99

36

19

19

62

39

15

20

27

9

5

21

5

1

-

22

1

1

-

23

39

20

4

24

3

1

-

25

60

28

9

26

11

6

3

28

11

2

-

29

3

-

-

  1. 1Number of unique SNPs in the REF dataset those were significant chromosome wide level.
  2. 2Confirmed in the VAL dataset at P < 0.05.
  3. 3Any of the confirmed SNPs that fell in the boundaries of QTL defined for the COMB dataset of any trait presented in Table 4.