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Table 5 Primers used for PCR amplifications of candidate genes in P. vulgaris in the Core and wild collections

From: Molecular ecology and selection in the drought-related Asr gene polymorphisms in wild and cultivated common bean (Phaseolus vulgaris L.)

Gene

Primer Name

F/R

Sequence (5′-3′)

Ta (°C)

Source

Sequence*

Asr1 (region 1)

ADOC01_01_Pv_12

F

GAGGAGACTAAGCCCATAGA

62

IRD

TC2798

ASR_TC2798_RV**

R

TGGACAGAAGCCATTCACTCCCAA

CIAT

Asr2 (region 2)

ASR_TC2798_FW2

F

AAGCACCACAAGCATCTTGAGCAC

53

CIAT

**

R

**

**

Asr2

ADOC01_03_Pv_05

F

CCACCACCACAAAGAGGA

60

IRD

CA910244

 

ADOC01_03_Pv_06

R

CAAACATTCTTCAAACTTGCTCAGA

 

IRD

 
  1. *Accession ID of the original EST sequences used to design the primers. TC accessions are from Gene Index (compbio.dfci.harvard.edu/tgi/).**The reverse primer ASR_TC2798_RV was also used in this case.