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Table 1 Genetic diversity values for SNPs across the 401 accessions of the common bean wild (104 accessions) and cultivated (297 accessions) collections

From: Molecular ecology and selection in the drought-related Asr gene polymorphisms in wild and cultivated common bean (Phaseolus vulgaris L.)

Gene

Set of sequences

SNP

Position consensus

SNP type

Majority allele

Minority allele

Majority allele frequency

Minority allele frequency

PIC*

Asr1

Cultivated

1

621

[T/C]

T

C

0.56

0.44

0.49

Wild intron

1

57

[A/C]

A

C

0.91

0.09

0.17

2

68

[T/C]

T

C

0.88

0.12

0.21

Wild exon

1

20

[T/C]

C

T

0.97

0.03

0.05

2

161

[T/C]

T

C

0.81

0.19

0.31

3

233

[T/C]

C

T

0.84

0.16

0.27

Asr2

Total**

1

24

[A/T]

T

A

0.86

0.14

0.25

2

29

[T/G]

G

T

0.86

0.14

0.25

3

127

[C/G]

C

G

0.98

0.02

0.03

Cultivated

1

6

[A/T]

A

T

0.93

0.07

0.12

2

26

[A/T]

T

A

0.93

0.07

0.12

3

31

[T/G]

G

T

0.93

0.07

0.12

Wild

1

247

[C/G]

G

C

0.93

0.07

0.13

2

345

[A/C]

C

A

0.62

0.38

0.47

3

350

[A/T]

A

T

0.62

0.38

0.47

  1. * PIC values higher than 0.2 indicated in bold text, PIC values between 0.1 and 0.19 indicated in italics.**Polymorphic sites only observed in heterozygotes are not depicted.