Table 2 Similarity of turbot EST-linked and anonymous sequences against model teleost genomes
Model species | Gac | Tni | Ola | Tru | Dre |
|---|---|---|---|---|---|
Total hits E < 10−5 (%) | 246 (54.4) | 179 (39.4) | 186 (41.0) | 194 (42.7) | 91 (20.5) |
Unique hitsa (%) | 210 (48.0) | 151 (33.3) | 146 (32.9) | 162 (35.7) | 69 (15.5) |
Multiple hitsb (%) | 36 (7.9) | 28 (6.3) | 38 (8.4) | 32 (7.2) | 22 (5.0) |
EST-linked sequences (E) | |||||
Unique hitsa (%) | 121 (60.8) | 98 (49.2) | 88 (44.2) | 93 (46.7) | 50 (25.1) |
Unique_L–Lc (%) | 98 (49.2) | 60 (30.2) | 70 (35.2) | 66 (33.2) | 44 (22.1) |
Multiple hitsb (%) | 25 (12.6) | 21 (10.6) | 32 (16.1) | 25 (12.6) | 19 (9.6) |
Anonymous sequences (A) | |||||
Unique hitsa (%) | 89 (36.3) | 53 (26.6) | 57 (22.4) | 69 (27.1) | 19 (7.8) |
Unique_L–Lc (%) | 78 (31.8) | 40 (16.3) | 53 (21.6) | 66 (26.9) | 17 (6.9) |
Multiple hitsb (%) | 11 (4.3) | 7 (2.9) | 7 (2.7) | 7 (2.9) | 3 (1.2) |
Unique hits summary | |||||
Mean size alignment bp | 119.0 | 106.4 | 110.3 | 109.0 | 107.1 |
Mean size A-Ed bp | 100.0–133.0 | 91.8–115.0 | 94.4–119.4 | 94.7–119.8 | 84.0–114.0 |
Maximum size A-Ed bp | 257–504 | 252–401 | 215–422 | 222–438 | 181–295 |
Mean E-value | 1.4E-07 | 4.2E-07 | 3.6E-07 | 4.0E-07 | 6.1E-07 |
Minimun E-value | 1.0E-140 | 1.0E-116 | 1.0E-120 | 1.0E-119 | 2.0E-62 |
Identity % Mean | 89.8 | 89.9 | 89.0 | 89.5 | 88.2 |
Identity % Range | 79.4–100 | 80.4–100 | 79.9–96.7 | 79.4–100 | 80.3–96.2 |
Retained at E ≤ 10−10 (%) | 182 (87%) | 122 (81%) | 110 (75%) | 129 (80%) | 50 (72%) |